Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01683 ATGGGCGAAGGAACTTTTGGACAGGTATTGGAGTGTTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAGTTGTTCGTGCTATAAAGAAGTATCGAGAGGCAGCCATGATTGAAATTGAGATGCTGCAGCAACTTGGGAAACATGATAAAGGGGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTTCGCGAGATTGGAAGACAACTATTGGAATGTATAGCATTCATGCATGACTTACACATGATCCACACTGATCTGAAACCGGAAAACATACTTCTGGTTTCATCCGAGTATCTTAAAATCCCTGACTACAAGAGCTCATCCAGATTACCATGCTCCTTTTTCAAGAGAGTGCCTAAGTCAAGTGCCATAAAGGTTATCGATTTTGGCAGCACTACTTATGAACGGGAAAACCAGAACTACATTGTATCAACACGTCATTACCGGGCACCTGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGATGTATATTAGTCGAGTTGTGCACTGGGGAAGCTTTGTTTCAGACTCACGAAAATTTAGAGCATCTTGCCATGATGGAGAGGGTTCTTGGTCCATTACCGCAGCAGATGTTGAAGAAAGTTGACCGACATGCTGAGAAGTATGTCCGAAGGGGGAGATTGGACTGGCCAGAAGGTGCAACTTCAAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTCGACTGCAGAACCTTATAATGCAGCATGTCGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGTCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGACGCCTTAAGACATTCATTCTTTATGAGAGATCACCTTAGGAGATGA 984 0.4238 MGEGTFGQVLECWDRERKEMVAIKVVRAIKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLHMIHTDLKPENILLVSSEYLKIPDYKSSSRLPCSFFKRVPKSSAIKVIDFGSTTYERENQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQQMLKKVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFMRDHLRR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01683 327 ProSiteProfiles Protein kinase domain profile. 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01683 327 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 327 - -
Car05g01683 327 SMART serkin_6 2 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01683 327 Pfam Protein kinase domain 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01683 327 PANTHER KINASE AFC1 1 327 - -
Car05g01683 327 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Car05g01683 327 Gene3D Transferase(Phosphotransferase) domain 1 49 320 - -
Car05g01683 327 SUPERFAMILY Protein kinase-like (PK-like) 2 323 IPR011009 -
Car05g01683 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Car05g01683 327 CDD PKc_CLK 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01683 Car-Chr5 61643935 61647734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01683 1 320 Core Cell Cycle Gene Families AT1G76540 25.076 2.61e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Car05g01683 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01683 K08287 - gmx:100808961 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01683 05 61643935 61647734 Car05g01683 05 61643935 61647734 ECH