Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01677 atgtctatcacttccttcaAATCCCTAACAATGGCCGAATCCCGCTTTCTATCTTCACCTTCTTTACTCTTCAACTCCAAAACCAAATCCACCTTTTTCTCACTTCCCTCCAAACCCCTCAAACTCCATCTCAATTCTTCTCTCTCCCTCACCAAAACCAAAACCAACCGTTCTCCCGTTCGCCTCTTCGTCGCGCAAACTTCTGATTGGGCTCAACAAGAAGAAGGAGACACACTCGCCACCCTACCAGACGAACAACCTGCCACTGAAACCGCCGCCGACGAATTTCAGAGCGGTGAAGAACAATCTTATGAAGAAGGTTTTGCTGAACCTTCCGAAGACGCCAAATTGTTCGttggaaacttgccttacgatgttgatagtgagaaattggctatgctttttgaacaggctggaaccgttgagattgctgaggttatttataacagggaaactgaccagagtcgtggatttggatttgtaaccatgagtaccgttgaagaagctgagtctgctgttgagaagtttaatagctatGATTATGATGGAAGACCGTTGACTGTGAATAAGGCTTCTCCAAAAGGATCTCGGCCTGAGCGAGCTGAGCGTCCACCTCGTAGCTTTGAACCAGTCataagagtttatgttggtaacttgccatgggaggttgataattcgaggcttgaacaagttttcagcgaacatggtaaggttgtgagtgctcgggttgtctatgatagagatactggtcgatcacgcggatttggctttgtcacaatgtctgatgaaaaggaaatgaatgatgccattgctgctcttgatggtcagagtttggaggggaggacaataagagtgagtgttgctgaggaccggcctaggcgtggctccttttaa 894 0.236 MSITSFKSLTMAESRFLSSPSLLFNSKTKSTFFSLPSKPLKLHLNSSLSLTKTKTNRSPVRLFVAQTSDWAQQEEGDTLATLPDEQPATETAADEFQSGEEQSYEEGFAEPSEDAKLFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNSYDYDGRPLTVNKASPKGSRPERAERPPRSFEPVIRVYVGNLPWEVDNSRLEQVFSEHGKVVSARVVYDRDTGRSRGFGFVTMSDEKEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01677 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Car05g01677 297 SMART rrm1_1 116 189 IPR000504 GO:0003723
Car05g01677 297 SMART rrm1_1 213 286 IPR000504 GO:0003723
Car05g01677 297 CDD RRM_HP0827_like 213 289 - -
Car05g01677 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Car05g01677 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 186 IPR000504 GO:0003723
Car05g01677 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Car05g01677 297 PANTHER OS02G0815200 PROTEIN 100 297 - -
Car05g01677 297 PANTHER OS02G0815200 PROTEIN 2 87 - -
Car05g01677 297 MobiDBLite consensus disorder prediction 79 110 - -
Car05g01677 297 SUPERFAMILY RNA-binding domain, RBD 111 205 IPR035979 GO:0003676
Car05g01677 297 SUPERFAMILY RNA-binding domain, RBD 205 295 IPR035979 GO:0003676
Car05g01677 297 MobiDBLite consensus disorder prediction 185 205 - -
Car05g01677 297 Gene3D - 64 199 IPR012677 -
Car05g01677 297 Gene3D - 200 296 IPR012677 -
Car05g01677 297 CDD RRM_HP0827_like 116 193 - -
Car05g01677 297 PANTHER RIBONUCLEOPROTEIN 2 87 - -
Car05g01677 297 PANTHER RIBONUCLEOPROTEIN 100 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01677 Car-Chr5 61601460 61603865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01677 108 294 Eukaryotic Initiation Factors Gene Family AT3G16380 34.673 4.46e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01677 - - gmx:100810381 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01677 05 61601460 61603865 Car05g01677 05 61601460 61603865 ECH
Car07g01111 07 9891060 9893891 Car05g01677 05 61601460 61603865 PCT