Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01667 ATGATCACAAATActcctttctcttttctttttttcctcttctctcttctcactcctaccctcatttcctcttcctctcttcAAAACCCTCAATTGGTTGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGTATCTAGGAGGAAGTTAGGGTACCTATCATGTGGGAGTGGAAACCCCATTGATGATTGTTGGAGGTGTGACTCCAATTGGGAGAAGAACAGACAAAGGCTAGCAGATTGTGCAATTGGATTCGGCAAAAACGCCATAGGTGGAAGAGATGGTAAAATTTACGTGGTAAACGACGACAGCGACAACGACGCAGTGAACCCGAAGCCGGGTACACTCCGTTACGCCGTGATCCAAAACGAACCGTTATGGATAATTTTCGCAAGAGACATGGTAATCAAATTAAAAGAAGAATTAATAATGAATTCTTTCAAAACAATTGATGGTAGAGGTGCTAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATATGTGACTAATGTTATAATCCATGGTATTAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCAGGGCACTATGGGTGGAGGACAGTATCGGACGGTGATGGTGTGTCTATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAATTGTAATGATGGTTTGATTGATGCTATTCATGGGTCCACTGCTATAACCATTTCTAACAATTACATGACACATCATGATAAGGTTATGTTGTTGGGTCATAGTGATTCTTATACGGAAGATAGGAATATGCAAGTTACAATTGCTTTTAACCATTTTGGTGAAGGCCTCGTTCAAAGAATGCCAAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCTCCCAATGACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCATCAGAGAGTGAATGGAAGAATTGGAACTGGAGATCAGAAGGGGATTTAATGTTAAACGGTGCATTTTTTACTGCATCGGGTGCTGAATCTTCATCTAGTTATGCAAGAGCTTCAAGCTTAAGTGCTAGACCATCTTCACTTGTCGGTTCCATAACAGTTGCTGCTGGTACACTTAACTGTAAGAAAGGTTCACCTTGCTAA 1224 0.3905 MITNTPFSFLFFLFSLLTPTLISSSSLQNPQLVVQEVNRKINASVSRRKLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVNDDSDNDAVNPKPGTLRYAVIQNEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDRNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKYEDASESEWKNWNWRSEGDLMLNGAFFTASGAESSSSYARASSLSARPSSLVGSITVAAGTLNCKKGSPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01667 407 SMART amb_all 133 330 IPR002022 -
Car05g01667 407 PANTHER PECTATE LYASE 18-RELATED 6 404 IPR045032 GO:0030570
Car05g01667 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Car05g01667 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Car05g01667 407 Pfam Pectate lyase 140 324 IPR002022 -
Car05g01667 407 Gene3D - 58 400 IPR012334 -
Car05g01667 407 PANTHER PECTATE LYASE 6 404 - -
Car05g01667 407 SUPERFAMILY Pectin lyase-like 36 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01667 Car-Chr5 61508310 61510693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01667 1 407 Polysaccharide Lyase AT5G63180 79.024 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01667 K01728 - gmx:100814679 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02067 05 65917708 65920231 Car05g01667 05 61508310 61510693 ECH
Car05g01667 05 61508310 61510693 Car05g01667 05 61508310 61510693 ECH
Car07g01119 07 9979769 9981924 Car05g01667 05 61508310 61510693 PCT