Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01663 ATGATGGATGAGCGGCGGCATTCCGTTGATATACCGATTTCTAAGACTCTTGTAGCATTGAGGAGAGTTAGGTCATTGAGGGATCCATCAACTAATTCTATGACCAAACATTCTTCTTTAATTGATCATGACAACTTACATTGGGAAAACGGTTATGCCAATGGGATTTCTCTGCTGTTTCCGGATTATTCTCATGCTTGtgattctgatgatgatgataatgataatgttgGCTTAAGATCAATGAATTTAGGTTTTAAGGGGCAAAGAGAGTTGGATGCTGCTGGTTTTGAATTAAATTCAAGGGTGAAGCCTAGTAGGATGTTGTGTCGGAGCGGAAAACAAGATAGTGGTGAACTAGTATACTCTAATATAAATCGACGAAGCATTTGTGGAATCTGTGGTAGCAACCATGGCGGTAAAGGATTGGATTTGGCTTGTGTTGTGCCTTCTATTAATGATTTCAAGGATGTGGAGTCGTGCTATAGAACAAATGCAATATCGTCTCAATTAGGGAGAACAGATCAAACTAAGTCAGCCAAAAAACCGCTGCGCAAGAATCAAGTCAAACCATCTGATGTAGTGGGAGATATTGCTAGCCATTTGGGGAGTCCATGCCTTTCTGCTCGTGATGCTTTATCGCCACCCCGTGGTTCCTCGGCACAGATAAATCTGGATTTTGGTGTTGTAGAAAATAGTGATAATGGATATGGATTAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAAAGAATCAAATCTTTATGATGAGATAGAAGACTGTCCGTTGATATTGAACTGCATCGATGACTCTGATCTTCATGGAAATAGAAATGTGAGACACAATGGTGGCGAAATTAGTCCAAATTTGGATACTCCTAGAATGTTATCTATGAAATTCAAGCCTAAATCATTTGGTGATTTGGTTGGACAAGATGTGGTAGTTAGGTCTCTTTTGGGTGCAATCTCTAGTGGAAGGATAACATCATTTTATCTCTTCCACGGTCCACGCGGTACAGGTAAAACATCTGCCTCCAGAATATTTGCCTCTGCTCTGAATTGTATCTCTGTCAAGGAGCAAAGACCATGCGGCAGGTGTAGAGAATGTGTTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCCCTTGTTAAGTATGCATGTACTCCTCCAGTTTCCTCGCGTTTTAAGGTCTTCATTATCGATGAATGCCAGTTATTGAACGAGGAGACGTGGGCGTGCCTTTCGAATAACCTAGAGAACATTTATCAACATTCGGTTTATGTGATGATCACTCCTGATCTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCTCAGAGGTATTACTTTCCGAAGGTTAAAGACACTGATATTGCATGCAGACTAGAAAAAATTTGTGCAGAAGAAGGTCTTGATTTTGAACATGCTGCTTTGGACCTTATAGCAGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTGAGTTTACTTGGTAAAAAGATCAAAATTTCCTTAGTTTACGAGCTTACTGGAATTGTTTCTGATGATGAATTGCTTAATTTACTGGATCTGGCATTGTCACCCGACACTACAAATACCGTTATAAGAGCTCGTGAGTTGATGAGATCAAGGATAGATCCTTTGCAACTTGTGTCACAATTGGCAAATCTCATAATGGACATCCTTGCAGGGAAATGTGAAAATGGTGATTACGAAGTCAGAAGTAGATTTTCTAGTAGATACACTTCGGAAGCGGATCTTCAGAAACTAAGCCATGCATTGAGAATACTTTCTGAAACCGAGAAACAGTTAAGAATTTCGAAAAATCAGACAACATGGTTCACTGTCGCTCTTCTACAGTTAAGCTCTGTTGATTATCCTTCTTCCACAGATGTTGATACCAAGTTGTTTATGAGAGGTGCATCCAATGGAGGGCAGAACTTGGAACATCTTGCTACTGGTGGAAGTGAAAATAAGTCATATAGATTAGTAGCGCACGAGGATCACGAAGGAACACTATATTCCATATGGTATAAAGCTACTGGGATATGTCAATCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGAAAGTTGTCTTCACTTCATGTTGATCAATCTACATCTTGTCTTGCTATTGCAGAGTTAGAGTTCGGCCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATAGCAAATTCGTTGCAGTGCATTTTAGGTTGCAACGTCGAGTTGAGGATAACTTATGTACCTCAAACTTCAAAGAAGTCATCTTTCAACATCTTTAGTTGTTCGCGTAAAATACAACAGAAATCATCGTTGTCCAACGAACTAGAAACTGAAATAGACTATGCTGATTACACCTCTCAAAATCTCATGATGAAGAATAAAACTCTATCTTCTTTCTCTGAATGTGGATCTCGGGTGCCACCACGGAAGTCTTACGATGAAACGGATGCTGTAACGACTCTGAGGAGCTGCGAAGGGAACTTACTCAGCTCAAGAGAAAGTTTATTGAATAGGTCATTTGAAGAGAGTATAGGGGCATCATGTTCTGGAGTTGATTCTTCCAAGAAAGAGGGTCACAATGGTGCACAAATAGTTCCATCGATCCACAATTCAGAGAATCAGTCTAACTGTTTTCCACAAACTCTTTGGCTTCAAAAGAAGTTTCGTTCTTCATATTCATCCAAGGTGTCTTTTCAGGGTACCTAA 2784 0.3969 MMDERRHSVDIPISKTLVALRRVRSLRDPSTNSMTKHSSLIDHDNLHWENGYANGISLLFPDYSHACDSDDDDNDNVGLRSMNLGFKGQRELDAAGFELNSRVKPSRMLCRSGKQDSGELVYSNINRRSICGICGSNHGGKGLDLACVVPSINDFKDVESCYRTNAISSQLGRTDQTKSAKKPLRKNQVKPSDVVGDIASHLGSPCLSARDALSPPRGSSAQINLDFGVVENSDNGYGLSCCWSKSPRFKESNLYDEIEDCPLILNCIDDSDLHGNRNVRHNGGEISPNLDTPRMLSMKFKPKSFGDLVGQDVVVRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFASALNCISVKEQRPCGRCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKYACTPPVSSRFKVFIIDECQLLNEETWACLSNNLENIYQHSVYVMITPDLDKLPQSAVSRAQRYYFPKVKDTDIACRLEKICAEEGLDFEHAALDLIAAKSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSDDELLNLLDLALSPDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGDYEVRSRFSSRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLQLSSVDYPSSTDVDTKLFMRGASNGGQNLEHLATGGSENKSYRLVAHEDHEGTLYSIWYKATGICQSSQLKTFLRKKGKLSSLHVDQSTSCLAIAELEFGHRHHVSKAEKSWKLIANSLQCILGCNVELRITYVPQTSKKSSFNIFSCSRKIQQKSSLSNELETEIDYADYTSQNLMMKNKTLSSFSECGSRVPPRKSYDETDAVTTLRSCEGNLLSSRESLLNRSFEESIGASCSGVDSSKKEGHNGAQIVPSIHNSENQSNCFPQTLWLQKKFRSSYSSKVSFQGT 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01663 927 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 295 641 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Car05g01663 927 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 105 903 - -
Car05g01663 927 Gene3D - 532 645 - -
Car05g01663 927 CDD AAA 309 425 - -
Car05g01663 927 Gene3D - 469 531 - -
Car05g01663 927 Pfam DNA polymerase III, delta subunit 311 468 - -
Car05g01663 927 CDD HLD_clamp_pol_III_gamma_tau 468 531 IPR045085 -
Car05g01663 927 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 105 903 - -
Car05g01663 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 517 IPR027417 -
Car05g01663 927 Gene3D - 289 466 IPR027417 -
Car05g01663 927 SUPERFAMILY post-AAA+ oligomerization domain-like 532 642 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01663 Car-Chr5 61472235 61476763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01663 286 533 Core DNA Replication Machinery Family AT1G21690 25.000 4.13e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01663 - - gmx:100819111 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01663 05 61472235 61476763 Car05g01663 05 61472235 61476763 ECH
Car07g01120 07 10006005 10011137 Car05g01663 05 61472235 61476763 PCT