Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01658 ATGGCAGTTTCAGAACCAAACGGCGACGTTTTCCCATGGCTGAAATCCATGGCAGTAGCACCAGAGTACAGACCGACAGCGTCGGAGTTCGAAGATCCGATCGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATACGGAATCTGCAAAATAATTCCTCCTTTTCCTCCTTCACCTAAGAAAACTGCCATAGCCAACCTAAACAGGTCACTTCCTAATTCCACATTCACGACACGTCAGCAACAGATCGGGTTCTGTCCACGGAAGTCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACACTTTCTCCGAGTTCGAAGCTAAAGCCAAATGGTTCGAGAAATGTTACATGAAGAAGCATAACAAAAAGGGTATTAATGGTAGTAATGCTCTTGAAACGGAGACACTGTTTTGGAAAGCGACGGTGGACAAACCGTTTTCAGTTGAATACGCAAACGACATGCCGGGTTCTGCGTTTTCGGCGAAATGTCGTCATGTTGGCGAAGCTGCTTCTGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCTGGGGTGACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATCTTCATAGTTTGAATTATCTTCATATGGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGTTATGGTGGACAGATTAACCCTCTTGTTACATTCGCTATTCTTGGTGAGAAAACAACAGTGATGTCACCAGAAGTATTTATTAGTGCCGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTCGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAACTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTCTATGACCTTGCCTTAGCTTTGTGTTCTAGAGTTCCTGGGGGAATCAGTGTGAAACCTCGGAGTTCTCGTCTCAAAGATAAGAAAAAGGGCGAAGGAGAAGCTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAAAACAATGATCTGCTTCACGTACTTGGAAAAGAAGCTTCTGTAGTGCTCCTTCCTCGCAGTTCAGTTGACATTCCTATTTGCTCAAAATTACGTGTTGGAAGCCAGAGAGTAAAAGTGAACCCTGGATTTTCCATTAATGTATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAATCGCGGAATTGCGCAAGAAAAAAATTTATGTTCTGTGAAAGACAAGTTTACTTTGTTGTGCGACGGGAAGGGGATTTCCTCATCTGAAGCAAATGGTGACACATCCCCTTCAAGTTCTAAGCAACTTCAAAGAGACAGTGAAAGTGAAACTAGTCAAGAAGATGGATTGCCAGATCAGAGATTGTTTTCATGTGTCACGTGTGGACTATTAAGCTTTTCTTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATTTTACGTCTTCTGATTGTAGCATCTTTAGTGATTGGGCTGTTGGATCTGGAGTACCTGTTGCCCGTGAAGAGGCAAATATTCCTGAGCCAAGCATGTATACAGGGTGGACAAAGAAAAATGCCAAAGAAAAGTCTTTAAATACTGAAGGAGGAAATGGTAATACAGCTCTTGCATTATTGGCTTCAGCTTATGGAAATTCTTCTGACTCTGAGGAAGATGCAGTTGACAATCATGAATTGAATGCGATAAAATCTACATCAGAAAGATTGCCTTCTAATTTTCGAGATTCACATGCTAATTCCATGACTAGACTTGATAAAGATGACATTCTTTCAGAGAGTTCCAGTTATGAAGCAAATAGATCTGAGTGTAATTTCGGTTATCAGCCTTGTGACAAATCTTTTGAGGAACAGGATTATAAAATCACTTCAGGGGTTGCATTTGAAAATACAAGGGCAATGCCTTATTCCGCAACGTTTAGTTCCCCGAATACTAATGATGCTGAAAAAAATGCTTTGTTGGCGCCGCAGTGTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGATCCCGCATATTGCTCTTATGTCATCCAGATTATCCCAATATAGAGGCCGAAGCTAAATTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAGTATTTCCTACAGGCATGGCACCAAGGAGGATGAAGAGAGGGTCCAATCAGCTCTGGATTGTGAGGAAGCGATTCCTGGGAATGGGGACTGGGCTGTCAAGCTAGGAATAAATCTCTTTTACAGTGCAAATCTTGGTCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCGGTTATATATTATGCATTTGGTTGTAGCTCTCCAACAAGCTCTCCCATAGAACCAAAGGTCTATCAGAGAAGGGACAGCAAACAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGGGATTATGAAGATGTTGAGGATGAGAAAAGTGTACATGGATTGATAATACCCGATGAGAAAATCGAGAGATCAAGAAGGACCCCCAAAACTGAAACTGCTATTACAAAATCAGGTAGCAAAAGGAAAACTACCTCAGGGAGTGGACGAACCAGGAAAGGAAGGTTTGTTGAAAAACATGTCGTTTTGGATAGTTCCGCCGAAGATAAACTCAATCCTCAGCAAAGGCAGACTCTTAGAAGCAAGCAAGCTAGGTGTGTTGAGAAAGATGGTACAGATTTTCTCAGTGATTGTTCTCCTCCATATCATCGTAGAAATCCTATAAGCAAACAAACCAATTGCACTGAAAGTGATGCAGTTTCTGATGATTTGTTTGATGATGATGATCACATGCGACATAGAAGGGGTTTTAATGTCAAAAAAGCTAAATTTATAGACAATGATGTGGTTTCAGATGGTACAGTGGACTATGATACTGATTGTCATCAGATGGGAGAACTTAGATGCAAGCAAATTGAAGATACAGAGAGAGACTCGATTTCAGAGGATTCTTTGGATGTTGGTTCCTTTCAGTTGCACAGGAAGACTTCTAGAAGCAAGAATGGCAACTTCATTAATGAAGAAGTGGCAATTTTTGATGACCAAATGGAGAATAGTTGTCAGAAGCAGAAAAAAAGAATTCCTAAAAGCAGGCAAGGTAAATCCCTTGTTGAAAAAGATTCAGTGATATCAGATGACCAACTGGAGCTGAACACGCAGAAGCAGCGGCGGAGGAATCCTATAAGTACAAAAGCCAAATACCTCGCCGAAGAGGATATTATATCTGATGACCAAACAGAGGGCAATTGTCGCAAGTACCAAAGACGGACAGTTAGAGTCAGGCAAGCCAAATGTATAATAGGGGAATATGTAATGTCTGACGACCAATTGGATAGTCCCTTTCAAAAGCAGAAAACAAGCATTTCTAGAAGGAAAAACAAAGGCATTGATAGAGAAGTTAAAAATGTAATCTCAGATGACCAACTGGAGGATCACTTTCAGCAGCAGCAGAGAAGAATTCCTAGGAGCAGGCACACCAAACAGGCTGAGAAAGAAATTACCGATGACTCGGCTGATAATAATGCTCATCTGCCGCATAGAACTTCTAAAAGGAAGAAAGCTAAATGCAAGGATGAAGATGGTATGAGTTTAGATGATGAAATGGAAGATGATTCTCTTCAGCAGCACAAGAGAAATCTTCCAAGTAAACAATCCAAACGAAAGACACTTAAACAGATGAAACAATCCAAATCTCTCCAAATGAAGAACCAGACACCTCAGCAAGTGAAATCAGAGGCTGCTCAGCAAATAAAGCAGCCTTCTCATTTGCGGAGTAAACAATCTGGTAACTCCAGGGAGGTTAGTTTAGATATGGACGAGGAGGAAGAAGGTGGACCTAGCACCCGCCTCAGAAAGAGAGTCCCAAAAGCTGAGGAGTCTGaagaaaaaccaaaagacaagcaaaccaaaaggaaaagggcaaaggaTGCTGCAGCTGCAAAGGTTTCAGCTGGCAATGCCAAAGCGAAGGATGGGGAAGAAGAATATCAGTGTGACATTGAAGGATGCACCATGAGTTTTGAGTCAAAACAAGAGCTGGTGCATCATAAGAGAAATATCTGTCCAGTAAAAGGTTGCGGGAAAAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGGCGAGTTCATGAGGATGACCGCCCCCTTAAATGCCCCTGGAAGGGGTGCAAGATGAGTTTTAAGTGGGCATGGGCTCGAACTGAGCATATTCGAGTCCACACCGGTGCACGTCCTTATGTATGTGCCGAGCCAGATTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGACATAAGCGAAAGACTGGTCATTTAGCAAAGAAGAATCGTCAATAG 4665 0.4199 MAVSEPNGDVFPWLKSMAVAPEYRPTASEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLPNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFSEFEAKAKWFEKCYMKKHNKKGINGSNALETETLFWKATVDKPFSVEYANDMPGSAFSAKCRHVGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGQINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRVPGGISVKPRSSRLKDKKKGEGEAVIKELFVQDVLQNNDLLHVLGKEASVVLLPRSSVDIPICSKLRVGSQRVKVNPGFSINVCNSEGMNSSKGFVSDDLVFNRNRGIAQEKNLCSVKDKFTLLCDGKGISSSEANGDTSPSSSKQLQRDSESETSQEDGLPDQRLFSCVTCGLLSFSCVAIVQPREPAARYFTSSDCSIFSDWAVGSGVPVAREEANIPEPSMYTGWTKKNAKEKSLNTEGGNGNTALALLASAYGNSSDSEEDAVDNHELNAIKSTSERLPSNFRDSHANSMTRLDKDDILSESSSYEANRSECNFGYQPCDKSFEEQDYKITSGVAFENTRAMPYSATFSSPNTNDAEKNALLAPQCDEDSSRMHVFCLEHAAEAEQQLRPIGGSRILLLCHPDYPNIEAEAKLVAEDLGIDYMWKSISYRHGTKEDEERVQSALDCEEAIPGNGDWAVKLGINLFYSANLGRSPLYSKQMPYNSVIYYAFGCSSPTSSPIEPKVYQRRDSKQKKVVAGKWCGKVWMSNQVHPLLAKRDYEDVEDEKSVHGLIIPDEKIERSRRTPKTETAITKSGSKRKTTSGSGRTRKGRFVEKHVVLDSSAEDKLNPQQRQTLRSKQARCVEKDGTDFLSDCSPPYHRRNPISKQTNCTESDAVSDDLFDDDDHMRHRRGFNVKKAKFIDNDVVSDGTVDYDTDCHQMGELRCKQIEDTERDSISEDSLDVGSFQLHRKTSRSKNGNFINEEVAIFDDQMENSCQKQKKRIPKSRQGKSLVEKDSVISDDQLELNTQKQRRRNPISTKAKYLAEEDIISDDQTEGNCRKYQRRTVRVRQAKCIIGEYVMSDDQLDSPFQKQKTSISRRKNKGIDREVKNVISDDQLEDHFQQQQRRIPRSRHTKQAEKEITDDSADNNAHLPHRTSKRKKAKCKDEDGMSLDDEMEDDSLQQHKRNLPSKQSKRKTLKQMKQSKSLQMKNQTPQQVKSEAAQQIKQPSHLRSKQSGNSREVSLDMDEEEEGGPSTRLRKRVPKAEESEEKPKDKQTKRKRAKDAAAAKVSAGNAKAKDGEEEYQCDIEGCTMSFESKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHLAKKNRQ 1554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01658 1554 Pfam jmjN domain 21 54 IPR003349 -
Car05g01658 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1491 1520 IPR013087 -
Car05g01658 1554 SUPERFAMILY Clavaminate synthase-like 190 359 - -
Car05g01658 1554 SMART JmjN_1 19 60 IPR003349 -
Car05g01658 1554 SMART c2h2final6 1521 1547 IPR013087 -
Car05g01658 1554 SMART c2h2final6 1461 1485 IPR013087 -
Car05g01658 1554 SMART c2h2final6 1491 1515 IPR013087 -
Car05g01658 1554 SMART c2h2final6 1438 1460 IPR013087 -
Car05g01658 1554 MobiDBLite consensus disorder prediction 1336 1374 - -
Car05g01658 1554 MobiDBLite consensus disorder prediction 502 519 - -
Car05g01658 1554 MobiDBLite consensus disorder prediction 502 529 - -
Car05g01658 1554 MobiDBLite consensus disorder prediction 1244 1287 - -
Car05g01658 1554 ProSiteProfiles JmjC domain profile. 176 345 IPR003347 -
Car05g01658 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1523 1547 IPR013087 -
Car05g01658 1554 MobiDBLite consensus disorder prediction 961 975 - -
Car05g01658 1554 SUPERFAMILY beta-beta-alpha zinc fingers 1477 1519 IPR036236 -
Car05g01658 1554 MobiDBLite consensus disorder prediction 1384 1420 - -
Car05g01658 1554 Pfam JmjC domain, hydroxylase 209 327 IPR003347 -
Car05g01658 1554 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Car05g01658 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1463 1485 IPR013087 -
Car05g01658 1554 Gene3D Cupin 13 349 - -
Car05g01658 1554 SMART cupin_9 176 345 IPR003347 -
Car05g01658 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1521 1552 IPR013087 -
Car05g01658 1554 MobiDBLite consensus disorder prediction 932 993 - -
Car05g01658 1554 ProSiteProfiles Zinc finger C2H2 type domain profile. 1461 1490 IPR013087 -
Car05g01658 1554 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1544 - -
Car05g01658 1554 ProSitePatterns Zinc finger C2H2 type domain signature. 1493 1515 IPR013087 -
Car05g01658 1554 MobiDBLite consensus disorder prediction 1244 1433 - -
Car05g01658 1554 SUPERFAMILY beta-beta-alpha zinc fingers 1509 1543 IPR036236 -
Car05g01658 1554 Gene3D Classic Zinc Finger 1459 1545 - -
Car05g01658 1554 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01658 Car-Chr5 61399378 61417306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01658 336 938 C2H2 Transcription Factor Family AT3G48430 45.820 1.11e-151 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g01658 JmjC 7.4e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01658 - - mtr:MTR_3g075210 2386.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01658 05 61399378 61417306 Car05g01658 05 61399378 61417306 ECH
Car05g01658 05 61399378 61417306 Car07g01122 07 10023485 10031929 PCT