Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01657 ATGGAACCGCTTGAACAATCTGAATCAATTGGTTCCTCCATCAAAGACCCACAATTGAGCTCTCATATTCAATCTCTTGATGATGATTACCATGATCCTCAACCCCCAAATCTCAATCACATTACCCACCTCGATGAGGAGCTTCAGAACAAGTTGGATTTGAAAGATGAGGATGAAATTGAGGGTAAAAGTTCAAATTTTGAAGTTAGGGATGAACATTTGTGTGATGAAGATGCTTCCCCAGAATCTGATAAGGGCCAAGGGTTTCACCatgatgatgatgatggttggattggtgatgatgaggttagtgattggattgaaaatgtgagtgagaaggttgatgaAGTGGAGAACAAGGATGAAAGAAGACATGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTCAAGACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTTAATCATCCAATTAGGAGAAGAAACCAGGCTTTTAAAGAGAAGGTGGGAGAAAGAGATGAACTGGAGGAAAGATCGGGCCAGACAGAATGCAAGTATTATTCAAGGTCTGGGGGTTGTAAGTTTGGGAATGATTGTAAATTTAATCACACCAGAGGAAAGTGTTCTGCAGTCCCAGTTTCAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAGCTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGATATGATTCCACTTCAGGATATGGTAATGGAAGTTCTATTTCATTACAAGATGCATCACAATCATCTACACCCTCATGGTCTTCTACCAGAAAATTAAATGAAACTACTCCTTTTGTGCCTATCATAATTTCACCGTCTCCTGGGGCTTCTCCTCGAAGTTCTGACTGGAATGGATATCAGGCACCTTTCTATTTATCTGAGAGGAGTATGCATCCACCTTCATCGTATGCTGTGAACAACCCAGCTGTTGAAACAAATGTTTATATGCATCGTCATAAGCAGATGCCAGTTGAAGAGTTTCCAGAAAGACCCGGTGAACCCGAATGCAGTTTCTTCTTAAAAACCGGGGATTGCAAATTTAAATCGCATTGCAAATTTCACCATCCAAAGAGTCGGATTGCAAGATTACCTCCCATCATCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAATGTGTGCACGCATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCGCCTCCGCCACCCCCTACTATGCGAGGACATGATCAACAATCCTCTTACACAAACTCAGCTAGTATTGAGGAGGAGGCTGGAAGTGGAGGTGCTAGTGATGCTACAATTCAGTAG 1419 0.4045 MEPLEQSESIGSSIKDPQLSSHIQSLDDDYHDPQPPNLNHITHLDEELQNKLDLKDEDEIEGKSSNFEVRDEHLCDEDASPESDKGQGFHHDDDDGWIGDDEVSDWIENVSEKVDEVENKDERRHEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPIRRRNQAFKEKVGERDELEERSGQTECKYYSRSGGCKFGNDCKFNHTRGKCSAVPVSELNFLGLPIRLGEKECPYYMRTGSCKFGSSCKFNHPDPTSVGGYDSTSGYGNGSSISLQDASQSSTPSWSSTRKLNETTPFVPIIISPSPGASPRSSDWNGYQAPFYLSERSMHPPSSYAVNNPAVETNVYMHRHKQMPVEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKSRIARLPPIILSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPPPPTMRGHDQQSSYTNSASIEEEAGSGGASDATIQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01657 472 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Car05g01657 472 Gene3D - 173 259 - -
Car05g01657 472 Gene3D - 406 457 - -
Car05g01657 472 Gene3D - 327 393 - -
Car05g01657 472 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Car05g01657 472 SUPERFAMILY CCCH zinc finger 225 251 IPR036855 GO:0046872
Car05g01657 472 MobiDBLite consensus disorder prediction 268 288 - -
Car05g01657 472 SUPERFAMILY CCCH zinc finger 365 389 IPR036855 GO:0046872
Car05g01657 472 MobiDBLite consensus disorder prediction 432 472 - -
Car05g01657 472 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Car05g01657 472 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Car05g01657 472 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Car05g01657 472 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Car05g01657 472 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Car05g01657 472 SMART c3hfinal6 360 387 IPR000571 GO:0046872
Car05g01657 472 SUPERFAMILY CCCH zinc finger 404 432 IPR036855 GO:0046872
Car05g01657 472 Gene3D - 103 168 - -
Car05g01657 472 MobiDBLite consensus disorder prediction 1 24 - -
Car05g01657 472 MobiDBLite consensus disorder prediction 444 460 - -
Car05g01657 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 203 IPR000571 GO:0046872
Car05g01657 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 250 IPR000571 GO:0046872
Car05g01657 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 157 IPR000571 GO:0046872
Car05g01657 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 362 387 IPR000571 GO:0046872
Car05g01657 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 409 432 IPR000571 GO:0046872
Car05g01657 472 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
Car05g01657 472 MobiDBLite consensus disorder prediction 1 96 - -
Car05g01657 472 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Car05g01657 472 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 84 472 - -
Car05g01657 472 MobiDBLite consensus disorder prediction 44 96 - -
Car05g01657 472 PANTHER PROTEIN PHOSPHATASE RELATED 84 472 - -
Car05g01657 472 SUPERFAMILY CCCH zinc finger 182 207 IPR036855 GO:0046872
Car05g01657 472 SUPERFAMILY CCCH zinc finger 131 160 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01657 Car-Chr5 61385279 61389210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01657 356 451 C2H2 Transcription Factor Family AT3G02830 45.833 6.90e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g01657 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01657 - - gmx:100809906 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01657 05 61385279 61389210 Car05g01657 05 61385279 61389210 ECH
Car07g01123 07 10037170 10040914 Car05g01657 05 61385279 61389210 PCT