Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01634 ATGTCAACAACAAGCAAACACTGTTCGGGCATTGCCTTTCAGATGATGAGTGATTCAACAAATGTGCTCTCGCCTGGAAGGACAACCAGTGAATCTGCTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTCATCACAACCCAGTTTGCATCAAATCTTCATCGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGAATGTCTTTAAGGACATACTTAGAGGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAGGCAGAGGATATCGATGCTTATGCACCTAAGGATCTGCTGATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCGTTTGGAAGTAGCCATGCTTTCAAACTAAGCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGCTAAATCGCATATCCGAGATTGGATCAACAATAGTTATGGGAAAAAATGAAGGTTTGCACACATCTGGTCATGCATATCGTGGAGAGTTGGAGGAAGTACTTAGAATAGTTAAGCCACAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTGAAGGAGCATGAGTCACTCGGAAAATCGACTGGCATTCGGCATACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTGCAGTTGAAATATAGTGACGGCGACAAAGCATTTGGTACATCTAATGAACTCTTCATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATTAGCATTGAAATATTTCGCCCCAAAAATTTAGAAACTTTTGCTGAAAGCACCTTAAAAGGGAAGATAAGAATTACTACAAGATGCCTATGGCTTGATAAAGGGAAGCTGCTAGATGCACTATATAAAGCTGCTCATGCAGCTCTTTCCAGCTGTCCCGTTAAAAGTCCACTGGCTCACGTGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTAATTGCCATTGCCATAGAAAATCCTGGAGCTGTTCTTTCTGATGAGGTAAACAAAAAATTGTCTGGGAAATCCCACGTTGGTCCAGAAATATCAACAATACGAAAAGCAGTGGATGAAAATAGAAAGGAAAGCCAGTCCACCACGCCGCAAATAAGAGATGATGACATTGATATTGAAGGACTATTACCAGAGAAAGACACCACTGCAAGTGGCGCTGAGGGCGACTTAACTGGTTCAGAGGATACAGATGAATTTTGGAAGCCATTCATTGCATCATCAGTTGAGAAATCAATCAAAGCTAACAATGGTTATGTTTCACGAAAGGAGCATAAGTCCAATCTGAAGAAAGATGATTCTGAAGACATTGAAGAAGCCAAGTCTGAAGAAATGTCTAATGCTGAGCCAGAGTCTCCAAAAACAGTTAGGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTGGTTTGCGGAGTGACCTACGTGACAGATTTAAAGTTGTGAAGGGAAGGATGATTCTTTGGGAAGAGATATCCCAGAGCTTGTTGGCTGACGGGATCCGCAGAAGTCCTGCACAATGCAAGTCTCTGTGGAGATCTTTGGTACTGACATACGAGGAGATCAAGAATGGGAAGGACAGCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATACTGTCTAACGATGAAGCACCCACAAAAAATTGA 1857 0.4163 MSTTSKHCSGIAFQMMSDSTNVLSPGRTTSESAVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLSKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSNELFIDERLRIALDGIIVISIEIFRPKNLETFAESTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPLAHVERTVSEVLRKMVRKYSGKRPEVIAIAIENPGAVLSDEVNKKLSGKSHVGPEISTIRKAVDENRKESQSTTPQIRDDDIDIEGLLPEKDTTASGAEGDLTGSEDTDEFWKPFIASSVEKSIKANNGYVSRKEHKSNLKKDDSEDIEEAKSEEMSNAEPESPKTVRKNKWKAEEVKKLIGLRSDLRDRFKVVKGRMILWEEISQSLLADGIRRSPAQCKSLWRSLVLTYEEIKNGKDSRKNWQYLEDMERILSNDEAPTKN 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01634 618 Gene3D - 30 180 IPR042173 -
Car05g01634 618 Pfam Myb/SANT-like DNA-binding domain 525 608 IPR044822 -
Car05g01634 618 PANTHER RIBONUCLEASE J 14 614 - -
Car05g01634 618 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 14 614 - -
Car05g01634 618 Gene3D - 527 588 - -
Car05g01634 618 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 186 232 IPR011108 -
Car05g01634 618 ProSiteProfiles Myb-like domain profile. 519 583 IPR001005 -
Car05g01634 618 MobiDBLite consensus disorder prediction 418 462 - -
Car05g01634 618 SUPERFAMILY Metallo-hydrolase/oxidoreductase 15 243 IPR036866 -
Car05g01634 618 MobiDBLite consensus disorder prediction 488 524 - -
Car05g01634 618 MobiDBLite consensus disorder prediction 418 443 - -
Car05g01634 618 CDD GT1 525 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01634 Car-Chr5 61104107 61110569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01634 526 610 Trihelix Transcription Factor Family AT2G38250 34.483 6.34e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car05g01634 Myb_DNA-bind_4 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01634 - - gmx:100783850 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01634 05 61104107 61110569 Car05g01634 05 61104107 61110569 ECH
Car07g01140 07 10175458 10185597 Car05g01634 05 61104107 61110569 PCT