Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01615 ATGGGAAGATCCCCATGCTGTGATGAAAATGGCCTTAAGAAAGGACCTTGGACTCCTGAAGAAGATCAAAAGCTAGTTCATCACATTCACAAACATGGCCATGGAAGTTGGAGAGCCCTTCCTAAGCTAGCTGGTCTAAATAGATGTGGAAAGAGTTGTAGGTTAAGGTGGACAAATTATCTAAGGCCTGACATTAAGAGAGGAAAATTTTCTCAAGAAGAAGAGCAAACAATTCTGCATCTTCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCTACACATCTACCAGGAAGAACGGACAACGAAATCAAAAATTTTTGGAACACTCATTTGAAGAAAAAACTAATTCAAATGGGTTTTGATCCAATGACTCACCAACCAAGAACAGATATTATTTCAACCTTACCATATCTACTAGCTTTAGCAAACATGACAGAAATGATGGAACATCATCAATCATGGGATGATCAACAAGCTTCAATGAGTTTATTACAAGCAGAGACAGTTCATCTAGCAAAACTTCAATGCCTTCAATATTTACTCCAACAATCTTCAAACCCCTTAAACATTATAAACAGTAATAATAACTCTTATGACCAAAATACCCTCATCACAAACATGGACCAACAACAACAATCTTTAAGTTTGTTAAACACAATTTCTAATGTGAAACAGAACCAAATTATTGATAATGCTGCAACCTCATTTTCTGATATGAATATTGATAATGATAACTCTCAACCACTCCACCACCAAAATATTCTACTACCTCATTTTTTAGACCAAGTCTCTTTCAATTCACAATCATGTTTGAATAATAATGAGCAGGGTCAAGGTACTATTATCACTACAAATAATAATAACTTTGCAACAGTTGATGATGAAACATTATGGATTAATATAAATATTCCATCTTCTTCTTCTTCTGCTCCAATATCTATTATTCCTCCAAATGCTAATAATCCAGGAGATGCAAGTAGCAGCACTTCCACTACTAGCTATGGAGTTGGAGGACCTTGTTCTTATTGGTCTGAACTTTTTTTTGAGGACCCCATTATGCATGATTTATCTTGA 1077 0.3528 MGRSPCCDENGLKKGPWTPEEDQKLVHHIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDIISTLPYLLALANMTEMMEHHQSWDDQQASMSLLQAETVHLAKLQCLQYLLQQSSNPLNIINSNNNSYDQNTLITNMDQQQQSLSLLNTISNVKQNQIIDNAATSFSDMNIDNDNSQPLHHQNILLPHFLDQVSFNSQSCLNNNEQGQGTIITTNNNNFATVDDETLWININIPSSSSSAPISIIPPNANNPGDASSSTSTTSYGVGGPCSYWSELFFEDPIMHDLS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01615 358 CDD SANT 69 112 IPR001005 -
Car05g01615 358 CDD SANT 16 61 IPR001005 -
Car05g01615 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car05g01615 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car05g01615 358 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car05g01615 358 Gene3D - 69 116 - -
Car05g01615 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car05g01615 358 SMART sant 66 114 IPR001005 -
Car05g01615 358 SMART sant 13 63 IPR001005 -
Car05g01615 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car05g01615 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Car05g01615 358 Gene3D - 11 67 - -
Car05g01615 358 MobiDBLite consensus disorder prediction 311 332 - -
Car05g01615 358 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car05g01615 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car05g01615 358 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01615 Car-Chr5 60879369 60881165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01615 1 358 MYB Transcription Factor Family AT1G34670 49.606 6.10e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01615 Myb_DNA-binding 8.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01615 K09422 - gmx:100782792 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01615 05 60879369 60881165 Car05g01615 05 60879369 60881165 ECH