Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01601 ATGATTAACGACAAAACTAAAGAAACACACCGACACCTGTTTGTCTTTTTAATACAAAAATCACAAGAAGAAGAAGCAAACTTAGAAGCTTTCCTCGAAAGCCAGGTGTTTTCAGAATCGAGATCCAGGTATAAAATTTTTCACTTAATTATGGCAACAATTATGGATTTTTACAACAACACACAACTTTATTCAGATCCATTCAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTTCTTCCACAAATTCAACCCcttctccttctccttcttcttcttcttcatcatcttcttTCACTCCTTTCTACACAAACGATTGTTCAACATCTATGACTCAAAACTTCATAGGTTTTGCTCAACCATCTTCTTCTTGTTCTGTTCTTGGTCTCAACCACTTAACCCCATCTCAGATCAACCAGATCCAAACTCAAATCcaacaccaaaacttcacacaacaacaagaacaacGTTTCAGTAATTCTCTAAACTTCCTTGGTGCAAAAGCGATCCCTATGAAGCACGTGGGAAATTCTTCAAAACCCACGAAGCTATACAGAGGGGTGAGGCAGAGACACTGGGGAAAATGGGTCGCTGAGATAAGACTACCAAAGAACCGAACGAGGCTTTGGCTTGGTACCTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGATAAAGCAGCTTTTAAGCTCCGTGGTGACTTTGCTAGGCTTAACTTTCCTAACCTGAAACACACAGGTTCATGTGTTGTTGGTGGTGAATTTGGTGAGTATAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGATTTAGCTCAGATCCAGAAACAAGGGAAGTCAGAGAAGCCAACCAAGAAGAAAACACCCTCCAAACTTGCTTCCAAGCCTGTTTCCACGGTCACTATTCCGTTGGAGGATTCTGTTGATTTGAAGAATGTTTCGGATAACTGTTGTAAAGTTGAAGTTTCGTTTTCGAGTGAAGGTTCTTCACCACTTTCGGATCTTACTTTTGGTGATGTTGGTGAGCCACAGTGGGAAGGTGATTCTGATAATTTCAATTTACTTAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTCTGA 1128 0.3723 MINDKTKETHRHLFVFLIQKSQEEEANLEAFLESQVFSESRSRYKIFHLIMATIMDFYNNTQLYSDPFRGELMEVLEPFIKSSSTNSTPSPSPSSSSSSSSFTPFYTNDCSTSMTQNFIGFAQPSSSCSVLGLNHLTPSQINQIQTQIQHQNFTQQQEQRFSNSLNFLGAKAIPMKHVGNSSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGDFARLNFPNLKHTGSCVVGGEFGEYKPLPSSVDAKLQAICEDLAQIQKQGKSEKPTKKKTPSKLASKPVSTVTIPLEDSVDLKNVSDNCCKVEVSFSSEGSSPLSDLTFGDVGEPQWEGDSDNFNLLKYPSYEIDWDSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01601 375 Pfam AP2 domain 188 236 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 ProSiteProfiles AP2/ERF domain profile. 187 244 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 SUPERFAMILY DNA-binding domain 187 244 IPR016177 GO:0003677
Car05g01601 375 Gene3D AP2/ERF domain 187 245 IPR036955 GO:0003700|GO:0006355
Car05g01601 375 SMART rav1_2 187 250 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 PRINTS Ethylene responsive element binding protein signature 188 199 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 PRINTS Ethylene responsive element binding protein signature 210 226 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 51 374 - -
Car05g01601 375 MobiDBLite consensus disorder prediction 82 102 - -
Car05g01601 375 CDD AP2 186 246 IPR001471 GO:0003700|GO:0006355
Car05g01601 375 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 51 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01601 Car-Chr5 60689902 60691534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01601 51 375 AP2-EREBP Transcription Factor Family AT1G78080 52.187 2.53e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g01601 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01601 K09286 - gmx:732559 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01601 05 60689902 60691534 Car05g01601 05 60689902 60691534 ECH
Car02g01091 02 29759985 29761049 Car05g01601 05 60689902 60691534 PCT