LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g01591	ATGTCTCCAATGGTTTCTCCAACTGACACAGATATGGAGAAAAACAAGCCAGATGAGAGAAATTTGCTACCTTCATATGATCAAGCACCATACGCACACAAAGTTGCAATTCCTCCAAGACAGAACTTATTCAAGGAATTCCAATACACTGTAAAAGAAACATTCTTTGCTGATGATCCTCTAAGATCCTTCAAAGACCAAACGAATTCGCGAAAGTTAGTCCTCGGTATTGAGGCCATATTCCCTATACTTAATTGGGGTAGAACTTACAACCTTCAAAAATTTAGAGGAGATTTAATAGCTGGTCTCACTATTGCAAGTCTTTGCATACCTCAGGATATTGGATACTCCAAGCTTGCACATTTGGCTCCACAGTATGGACTATACTCCAGCTTTGTTCCACCACTGATTTATGCATTCATGGGTAGTTCCCGCGATATTGCAATAGGACCTGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTGCTTAGTAATGAGATTGATCCTGTTACACATGCAGCAGAATATCAGCGACTTGCCTTTACAGCCACTTTTTTTGCTGGGATTACACAAGCAACACTTGGGATTTTCAGGTTAGGATTTTTGATTGATTTCCTATCCCATGCTGCTATTGTTGGTTTTATGGGCGGTGCTGCCATCACAATTGCACTTCAACAGCTAAAGGGTTTCCTTGGCATCCCTACTAAAATGTTCACAACAAAAACCGATATTATATCGGTGTTGCGCGCAGTATTCTCATCAGCACATCATGGATGGAACTGGCAAACTATATTAATCGGAGCTAGCTTTTTGTGTTTTCTTCTGGTCGCCAAATATATTGTAAATCACATAGAGAAAGGGATCAATCCTTCATCTGTTAAAGAAATTTATTTTAGCGGCGATTACCTTGGAAAAGGCTTTAAAATTGGCGTCATGGCAGGCATGATCGCACTGACCGAAGCCATAGCTATTGGAAGAACATTTGCTTCTATGAAGGACTATTCACTGGATGGAAACAGAGAAATGGTGGCATTAGGAACAATGAATATTGTTGGTTCGATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCGGCGGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAATAGTTGTTTTTTTAACACTGCAATTCATCACTCCTCTTTTTAAGTACACTCCAAATGCAATTCTTGCTTCCATCATCATTTCGGCTGTCATCAACCTTGTGGACTATCAGGCAGCAATTTTGATTTGGAAGATTGATAAATTTGATTTTATTGCTTGCATGGGAGCATTCTTTGGAGTTGTTTTCGTCTCAGTTGAGATAGGACTTCTAATTGCTGTTTCTATATCCTTTGCAAAGATCCTATTACAAGTGACAAGGCCTCGAACAGCTATTTTAGGAAAGATTCCTGGAACTGCTGTCTATAGAAACATCCAACAATACCCAGAAGCTAGTAAGGTTTCAGGTGTACTCATTGTCAGAGTTGATTCTGCAATATACTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGCTTACAGATGAAGAAACGGTAAAAGGAGACTACCACACAAAAATTCAGTTTTTGATAGTTGAAATGTCACCTGTTACTGACATTGATACAAGTGGCATACAAGCCTTTGAAGAGTTACATAGAAGTCTTGAGAAAAGAGGTGTTCAGCTAGTTCTGGCAAATCCTGGTTCTGCAGTGACAGACAAACTTTACACTTCAAATTTTGCAAACGTAGTTGGTGAGGACAAGATCTTCCTCACAGTTGCAGAGGCTGTTGCATATTGTTCTCCAAAGTTGGATGAGAACCCATGA	1866	0.3987	MSPMVSPTDTDMEKNKPDERNLLPSYDQAPYAHKVAIPPRQNLFKEFQYTVKETFFADDPLRSFKDQTNSRKLVLGIEAIFPILNWGRTYNLQKFRGDLIAGLTIASLCIPQDIGYSKLAHLAPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTLLSNEIDPVTHAAEYQRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIPTKMFTTKTDIISVLRAVFSSAHHGWNWQTILIGASFLCFLLVAKYIVNHIEKGINPSSVKEIYFSGDYLGKGFKIGVMAGMIALTEAIAIGRTFASMKDYSLDGNREMVALGTMNIVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSIVVFLTLQFITPLFKYTPNAILASIIISAVINLVDYQAAILIWKIDKFDFIACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPGTAVYRNIQQYPEASKVSGVLIVRVDSAIYFSNSNYVKERILRWLTDEETVKGDYHTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKRGVQLVLANPGSAVTDKLYTSNFANVVGEDKIFLTVAEAVAYCSPKLDENP	621

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car05g01591	621	Gene3D	STAS domain	471	616	IPR036513	-
Car05g01591	621	ProSiteProfiles	STAS domain profile.	491	613	IPR002645	-
Car05g01591	621	SUPERFAMILY	SpoIIaa-like	493	614	IPR036513	-
Car05g01591	621	CDD	STAS_SulP_like_sulfate_transporter	492	606	-	-
Car05g01591	621	Pfam	Sulfate permease family	95	295	IPR011547	GO:0016021
Car05g01591	621	PANTHER	HIGH AFFINITY SULFATE TRANSPORTER TYPE 1	280	621	-	-
Car05g01591	621	PANTHER	HIGH AFFINITY SULFATE TRANSPORTER TYPE 1	24	280	-	-
Car05g01591	621	Pfam	STAS domain	492	609	IPR002645	-
Car05g01591	621	ProSitePatterns	SLC26A transporters signature.	124	145	IPR018045	GO:0008271\|GO:0008272
Car05g01591	621	PANTHER	SULFATE TRANSPORTER	280	621	IPR001902	GO:0015301\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g01591	Car-Chr5	60552535	60556815	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g01591	1	620	Inorganic Solute Cotransporters	AT1G22150	70.713	0.0	901

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g01591	K17470		-	gmx:100804208	1019.22

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g01591	05	60552535	60556815	Car05g01591	05	60552535	60556815	ECH
	Car02g01081	02	28569384	28573731	Car05g01591	05	60552535	60556815	PCT

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