Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01576 ATGAACCGCCAAGTGTTACCGCCGATGCCGACGAAAGCTAGCAATCTCGACCCTAAAATCTGGAGAGCAATCGCCGGCGCCGCCGTTCAAATCCCAACTGTTAATTCTAGGGTTTACTATTTCCCTCAGGGACACATGGACCAAGCTTCTTCACCTCCTAACAATCTTTCTCCTCTTCTTCTCTCCAGGCCGTTTATTCTTTGTACCGTCTCCACCGTTCATTTCCTCGCCGATCCGAACACGGATGAGGTTTTCGCGAAGCTCTTTCTTCAACCTCTTAATGATTTCACTGCTGCTTTTCCTCGACTTCCTAACCGCGACGTTGATGACGGTGACAGAATCTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCTAATAACGGTGGTGGATTTTCCGTTCCGAGGTTTTGCGCTGATTCTATTTTCCCGCCTCTTGATTTTAGTATGGAGCCTCCGTTTCAACCGCTTCATATCACCGACGTTCATGGTACGACGTGGGAATTTCGCCACATTTACCGTGGTACGCCGAGGAGGCATTTACTTACTACCGGATGGAGTAGGTTTGTTAACGGAAAGAAGCTCGTCGCCGGTGATTCGGTTGTTTTTATGAAGAACACTAGGGGGAAAATGTTCGTTGGAATCCGCCGTGCCGTCCGATTGGTTCAGCCTCGAACTGGCACCGACTCGCCTAGGTTGTGTCTCCCAATGTGCGGGGTGAGAAACAGggtggatgacgaggaggagaagcagcagaaggaggaggaggagaagTGCAAAGAGGGGTTTTCAAGGAATGGAAAGGGGAAATTGTCGCCGAAGTTGGTTTCGGAGGCGGCGGAATTGGCGGCACAGGGAATGCCGTTTGAAGTTGTGTATTATCCGAAAGCCGGGTGGTCGGATTTTGTGGTGAGAGCTGAGGTTGTGGATGATGCAATGGGTGTTATGTGGTCTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCGTCAAGGACTACATGGTTTCAGGGTGTAGTCTCCTCTCTCTCTGTTCCTGATAATGGCCCTTGGCGTGGTTCCCCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACATCCAAGTGGGTCAGCCCTTGGCAGGTCGAACTTCTTTCTACTACATCTTCACTTCATACTGCATTTCCCTCCTTAAAAAGGCTTAGAGGGGGATCTGGAGTGTTAATTGATAGAGAGGGAGACCCCTTTTCTATGACAGCATTCACTCATTCAACAATGGGACAATTGAACCAAGCATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTTCTATTTCAAGTTTTTCCAACTTTACGGGTGATAACTCCCGTTTGTGTATGGGTAACTCCTTTGGCAACAACACGGTGCCGGGGTTGAAATCGTTGTCAACTGAGCTAAATGTTGGCAGTTCTCGATCTGATGATTTGTCGCCAGAGAGTCAGAGTAGTTTGCCTTCCTTTGGCACTGACTTTTTGCGGAACCATAATTGCAATTCAATGAAACCCGGGTCTGTATCGTTTCAGCTATTTGGCGCAGTCATTCAGACTGAACAGCCCGTTGAAAGTGGTTCGCGTGGTACAAGTTGCACAGGAGATGATAGCAGCAAAGGCTGCAATGAAACTGAAGGCATTAACAACTCTCTTGAGGATTCTTTGACTTACTCAAAATTGCTTGACAGGATGGATGGCCAGTGCCAAATAGCCTCAACAGTCGAGGCATGTTATTTGTGA 1797 0.4652 MNRQVLPPMPTKASNLDPKIWRAIAGAAVQIPTVNSRVYYFPQGHMDQASSPPNNLSPLLLSRPFILCTVSTVHFLADPNTDEVFAKLFLQPLNDFTAAFPRLPNRDVDDGDRISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDFSMEPPFQPLHITDVHGTTWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGKMFVGIRRAVRLVQPRTGTDSPRLCLPMCGVRNRVDDEEEKQQKEEEEKCKEGFSRNGKGKLSPKLVSEAAELAAQGMPFEVVYYPKAGWSDFVVRAEVVDDAMGVMWSPGMRIKMAVETDDSSRTTWFQGVVSSLSVPDNGPWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTSSLHTAFPSLKRLRGGSGVLIDREGDPFSMTAFTHSTMGQLNQALLSYGTFPAGMQGARHDLFSSISSFSNFTGDNSRLCMGNSFGNNTVPGLKSLSTELNVGSSRSDDLSPESQSSLPSFGTDFLRNHNCNSMKPGSVSFQLFGAVIQTEQPVESGSRGTSCTGDDSSKGCNETEGINNSLEDSLTYSKLLDRMDGQCQIASTVEACYL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01576 598 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Car05g01576 598 SMART B3_2 117 219 IPR003340 GO:0003677
Car05g01576 598 CDD B3_DNA 116 217 IPR003340 GO:0003677
Car05g01576 598 MobiDBLite consensus disorder prediction 245 270 - -
Car05g01576 598 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 597 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car05g01576 598 SUPERFAMILY DNA-binding pseudobarrel domain 113 223 IPR015300 -
Car05g01576 598 Gene3D - 114 219 IPR015300 -
Car05g01576 598 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Car05g01576 598 MobiDBLite consensus disorder prediction 541 565 - -
Car05g01576 598 PANTHER AUXIN RESPONSE FACTOR 11 597 - -
Car05g01576 598 MobiDBLite consensus disorder prediction 245 267 - -
Car05g01576 598 Gene3D - 317 391 - -
Car05g01576 598 Pfam Auxin response factor 279 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01576 Car-Chr5 60359662 60363606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01576 16 564 B3 DNA Binding Superfamily AT1G77850 48.404 2.53e-172 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car05g01576 B3 2.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01576 - - qsu:112025063 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01576 05 60359662 60363606 Car05g01576 05 60359662 60363606 ECH