Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01572 ATGCTTTCGTTCATTTGTACCTTGTTGTTGCCGGCGATGACCGGGGAACGATGTTACCGGCGAAAGAACATGGCGGGGGAAGAAGGTTCTACCGCCGTCGTCGAGGAGAGGACATATCCGGCATATTTTCCGGCGGACCGATCGGAACTTCCACACGAGTCCGCCGCGGTCAAGATGGATTACTTCACGCAGGCGAGGAAAGCGCTTAGCGAACGCTCTCCTCATGATGCCGCCGAGGAAACTTCGACTTCTGCTGTGGTTACTCTGCCGAGTGGGTTGGCAAGTTTGTTAAACCGCAACGGTGATAACCGGAAGCGCAACAAGAAGTCCCATGCCGGTGGCGGTGATAAGAAGAAAAAGAAATCGTCTAGAGCGAGTGATAAGTTGCGCTGTTCCAACGTTTGGGTTGAAACGGAGGAGTATTTCAGGGACTTAACTTTGTCTGATATTGATACCTTGTTCGAGGTTACTTCTTCTGATAGTTTAGCTTCTCGTGAGTGTTTTACTATTCCGCATTTGGGAAATGCTCGTAGGTTGAATGTAGTCATTAATAGTGAGGATGAGAAGAAGGTTGATCCAATGTTAAATATAGTTAGTAGTGAGAATGGGGACAAGGCTGTTGAAGATGCTAACAATGAGAACGGTTCATTGGTAATTGAGTTAATTGACGTTGCTGCATTGGAAAGAGCTTTGCCTCAGGATGACAATAATTGTAATGCTTATGATGATTCTTGTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGGATAAAATTTCGTTAACTTCCGAGCGTCCATCCAAGAAAAGAAAGCTTTTGGGTGGCGATGCTGGGTTGGAGAAAGTTTTAATGACTATTCCTTGTGATGGGGACCAACTTTATTGTCATTATTGTGGCAGGGGAGACTCTGGCAGAGATTCCAATCAGTTAATAGTCTGTGCATCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACAAGGTGATGTAGATGAGTCTTGGTTGTGCTCTTGGTGTGAGCAAAAGGGTGATGTTGATGACTCGGCAAGTCCTTGTGTTCTTTGCTCGAAGAAGGGTGGCGCTTTAAAACCAGTTAATAGTGTTGTTGAAAGTGTTGGGTCTGTCCAGTTTGTGCACCTGTATTGTTCTCTGTGGATGCCGGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTGTTATGAACGTGGGAGGCATCAAGGAAACCCGAAGAAAATTGATCTGTAATGTTTGCAAATTGAAATGTGGTGCATGTCTTCGGTGTAGTCATGGATCCTGCAGAACTTCTTTCCACCCTTTATGTGCTAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATATTGAATTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAGGGAAGCAGAAACATCTTGCCATTGGGAGGCTCTATTGCAGTTGGCAGTGAATTTTCAGAAGCTAACGACCTTCCAGTGACACTGCCAGTGAAAAGTGAACACAATGTTAAAATTGGTTGCAGCAACGGAGGAGGGTTGGAGTCTGATAGTAATCCAGACAAGTTGAACCATAATGATGAACCTCCCGAAGGAGGATTGTCTGTCTGTAGGATTAATGCTCACAATATGTTGGGATGTGGTGCTGCCCCACCACATAATATTGGAGGGGCTGTGAGAACCATCGACAATGTTGATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAGAAGTTGATAGATCGGGGGAAAGTTGATGTAAAAGATGTGGCATTGGAGATTGGCATTTCACCAGATACACTAACTGCGAATATCAATGAAGACTATATGGCCCCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGTGCATTTCATAAAAGCCTAAAAGCCAAATTCAAACCGGCCAATGTATCTATGGATGAAAGCGGAGCTTCAGATGGTTCTGATACTTTACCAATATCTGATTCAGGCTTGTTGGATCCTGTTGCTGTTAATGTTAAATCTGTACCACCAAGGAGAAGAACTATCAATAACATTAGGATTTTGAAGGACAATAAAGTGATATGCTCATCGGAGGGGGTTACTATTGAGAATGGGTTGTCAATTGACAAATTCCCAGTTTGTCAGCCTGAGTGTGAAAATCCAGGAAGTTCTGACAAAGCATCAATTCCTGATGCCACTGAAACGCTTCATTATGCAGGCAATGCTGACGAACTCTACAAATCCAGCTTATCTGTTTGCGTATCAGAACAGAAGCCTATTGCTTGTTTGCAGAATGCGTCTATGCTTTCTGATCAGCACTATACAGCTCATTCTGCTTCAGAAACACCCATTTCTGGTTTCATAAAAATGGATGCAATCTCAAGTTACATTCACCCATACATTGACAAGAAATTGATGCAGATTCGTGATGGTTTGCCCATGGGGGATATTTTAGCAGGTTCAAGTGGCTACATAAATTCTTTGGTTGACTCCTCTGGGACTAGTGGCTGCTCCAGTAGCGAAAATCAGCAATTAATTTGCACTGACGTTGCCATGCCTGATCTAGCAAAGATGGAGCAGTTGGTTCGAGATGAAAACATGCGACTTATGGAATTTTATTCAGAAGACGAGTTGGAAGGGGAACTTATACATTTTCAGTATAGATTACTGCAGAAAGCAGTTGCAAAGAAGAGGCTTACTGAAAACTTGGTCCACAATGTTGCCGAGAGTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGTTAATCAATATTTGCGTGATCTTAAGGAGGCAAAAAAACAGGGTAGAAAAGAAAAAAAGAACAAGGAAGCGCAGGCAGTGTTGGCGGCTGCAACTGCTGCAGCAGCAGCATCTTCTAGGGTTTCTTCTTTCCGAAAAGACACCATAGATGAATCTGTGCAACAGGAGAATTCATTGAAGCTAAATGCTTTAAGTGGGCGGACTGGGGGATGTTCTCAGCCAATGCCACGAGCCAAAGAGACTCTTTCGAGAGTTGCTGTCACTAGAGCTTCATCAGAGAAATATTCGGATTTCTGTCTGCCAAGCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCCGTCGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCCAGAAGTTGTGGGGCATCTGCTATAAATAGCTGGGAGAAGCCTTATGTCGTTGCCGAATGTGCTCTCTGCGGTGGTACAACTGGTGCTTTTAGGAAGTCATCTAATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGCTTTTGGAGTCTACATTTAGAAGAGGGCAGATAAATACTATCGAAGGAATGGAGGCTGTGCCAAAAGGAGTTGATGTTTGTTGCATCTGCCACCACAAGCATGGTGTATGTATGAAGTGTTGCTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGGTTGTGAGGACTGTTGGGGGCAAGATTCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCAAAGGCTGAAACACAAAAACATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTGGAACTTGAGAGATTACGTCTCCTCTGTGAAAGAATTGTCAAGCGGGAAAAAATAAAGCGGGAGTTGGTTCTATGCTCACATGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCACAGTCCTTTTGTCCTTCCTGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGTGACCACTGAGGGATACAGATCATGCAGTGAAGCGGTCCAAAGATCAGATGATGTAACTGTGGATAGCTCAGTTTCTGCTGAGCACCGTGTTAAAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCCCAAAGTCACTATAACCACAAGATTCCAGAGAAGATGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACGTCGCACAATATCTCCGAGGAGGGTGGATGGAGATCCAAACCTCGAAAGTTACAGACTACTGAACCATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCCGCGGATTGCTTGTCAAATGACAAGCAGTCTAACGAGGATATATATGCTAGTGGACCAGGGGAACCTGATGGGTAG 4374 0.4367 MLSFICTLLLPAMTGERCYRRKNMAGEEGSTAVVEERTYPAYFPADRSELPHESAAVKMDYFTQARKALSERSPHDAAEETSTSAVVTLPSGLASLLNRNGDNRKRNKKSHAGGGDKKKKKSSRASDKLRCSNVWVETEEYFRDLTLSDIDTLFEVTSSDSLASRECFTIPHLGNARRLNVVINSEDEKKVDPMLNIVSSENGDKAVEDANNENGSLVIELIDVAALERALPQDDNNCNAYDDSCVSLEWFLGCRDKISLTSERPSKKRKLLGGDAGLEKVLMTIPCDGDQLYCHYCGRGDSGRDSNQLIVCASCKVAVHRKCYGIQGDVDESWLCSWCEQKGDVDDSASPCVLCSKKGGALKPVNSVVESVGSVQFVHLYCSLWMPEVYIDDLKKMEPVMNVGGIKETRRKLICNVCKLKCGACLRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQGSRNILPLGGSIAVGSEFSEANDLPVTLPVKSEHNVKIGCSNGGGLESDSNPDKLNHNDEPPEGGLSVCRINAHNMLGCGAAPPHNIGGAVRTIDNVDASDSPSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANINEDYMAPDVQHKIVNWLKAHVYTGAFHKSLKAKFKPANVSMDESGASDGSDTLPISDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKVICSSEGVTIENGLSIDKFPVCQPECENPGSSDKASIPDATETLHYAGNADELYKSSLSVCVSEQKPIACLQNASMLSDQHYTAHSASETPISGFIKMDAISSYIHPYIDKKLMQIRDGLPMGDILAGSSGYINSLVDSSGTSGCSSSENQQLICTDVAMPDLAKMEQLVRDENMRLMEFYSEDELEGELIHFQYRLLQKAVAKKRLTENLVHNVAESLPQEIDKTHQQRWDAVIVNQYLRDLKEAKKQGRKEKKNKEAQAVLAAATAAAAASSRVSSFRKDTIDESVQQENSLKLNALSGRTGGCSQPMPRAKETLSRVAVTRASSEKYSDFCLPSSDFSKEQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSCGASAINSWEKPYVVAECALCGGTTGAFRKSSNGQWVHAFCAEWLLESTFRRGQINTIEGMEAVPKGVDVCCICHHKHGVCMKCCYGHCLTTFHPSCARSAGLFMVVRTVGGKIQHKAYCEKHSSEQRAKAETQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFVLPDGSSESATTSLKVTTEGYRSCSEAVQRSDDVTVDSSVSAEHRVKVAVSMDTDPKLDDDCSTSQSHYNHKIPEKMQFSGKQIPRRASATSHNISEEGGWRSKPRKLQTTEPFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDIYASGPGEPDG 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01572 1457 ProSiteProfiles Zinc finger PHD-type profile. 1044 1093 IPR019787 -
Car05g01572 1457 ProSiteProfiles Extended PHD (ePHD) domain profile. 349 470 IPR034732 -
Car05g01572 1457 MobiDBLite consensus disorder prediction 1434 1457 - -
Car05g01572 1457 MobiDBLite consensus disorder prediction 96 125 - -
Car05g01572 1457 ProSitePatterns Zinc finger PHD-type signature. 1047 1090 IPR019786 -
Car05g01572 1457 ProSiteProfiles Extended PHD (ePHD) domain profile. 1112 1221 IPR034732 -
Car05g01572 1457 ProSiteProfiles Zinc finger PHD-type profile. 291 342 IPR019787 -
Car05g01572 1457 Coils Coil 1241 1261 - -
Car05g01572 1457 SUPERFAMILY FYVE/PHD zinc finger 1038 1091 IPR011011 -
Car05g01572 1457 MobiDBLite consensus disorder prediction 514 536 - -
Car05g01572 1457 MobiDBLite consensus disorder prediction 1378 1414 - -
Car05g01572 1457 CDD ePHD 1115 1220 - -
Car05g01572 1457 Pfam PHD-finger 1058 1091 - -
Car05g01572 1457 Pfam PHD-finger 307 340 - -
Car05g01572 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 472 IPR013083 -
Car05g01572 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1223 IPR013083 -
Car05g01572 1457 SMART PHD_3 1167 1221 IPR001965 -
Car05g01572 1457 SMART PHD_3 1046 1091 IPR001965 -
Car05g01572 1457 SMART PHD_3 293 340 IPR001965 -
Car05g01572 1457 SMART PHD_3 414 470 IPR001965 -
Car05g01572 1457 Pfam PHD-zinc-finger like domain 1114 1220 - -
Car05g01572 1457 Pfam PHD-zinc-finger like domain 351 469 - -
Car05g01572 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 344 IPR013083 -
Car05g01572 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1036 1093 IPR013083 -
Car05g01572 1457 ProSitePatterns Zinc finger PHD-type signature. 294 339 IPR019786 -
Car05g01572 1457 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 241 477 - -
Car05g01572 1457 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 840 1453 - -
Car05g01572 1457 SUPERFAMILY FYVE/PHD zinc finger 284 341 IPR011011 -
Car05g01572 1457 Coils Coil 935 959 - -
Car05g01572 1457 PANTHER PHD FINGER PROTEINS 241 477 - -
Car05g01572 1457 PANTHER PHD FINGER PROTEINS 840 1453 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01572 288 472 C2H2 Transcription Factor Family AT3G14740 29.255 3.08e-16 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01572 05 60305261 60316714 Car05g01572 05 60305261 60316714 ECH