Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01556 ATGGAGGATTTGCAAAGAGCACTGAAGGATCGTAATTTAACGGTTTCTAATGTTCCAGGAAAGGGTCGTTCTCTCTTTACTACTAGGGATTTTTACCCAGGGGAAGTGATTATTAGTGAAGAGGCTTATGTTTGTGTTCCAAATAACAATAACTCATCCCACAAAAGGTGTGATGGATGTTTCACAACAACTAACCTTAGCAAGTGCTCACGTTGTCATGTTGTTTGGTACTGCGGAACCGCATGTCAGAAGTCGGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCTAGACTACGACAAGAGAAAATCTGTCACACCATCTATTCGGCTGATGCTCAAACTTTATCTTCGAAGGAAATTGCAAGATGAGAAGATCATTCCAAGCACAGCTAGGGATAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGTTGTATGCACAAATGGCTAATCTTGTACATTTAATACTACAATGGCCTGAAATCACTATAAAAGAGATTGCAGAAAATTTCTCCAAGTTTGCATGTAATGCGCATACCATTTGTGATAGTGAGTTGAGACCTTTGGGAACTGGACTGTATCCTGTTGTTTCCATTATCAATCATAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAGGGAAGGACAGCATCAGTACGTGCTTTACAGCATGTACCCAAAGGGACTGAGGTAATGATTAGTTATATAGAAACAGCTGGAAGCACTGTGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCGCATGTGTTTGTCCCCTCTGCTCTAAATCGGGTCAGTATGACGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTCCGTACAACTGATGGAAAAGCATTTCAATGCCAAGATTGTGGATTAGTTAGGGACAAGGAAGAGATAAAGAAAATTGCAACTGAAATAAAATTGCTATCAGAAGAAGCTTCTAAGCCTTCTTCCAGGGGCAATTATCAAGAAGCTATCACCATATATACAATGATTGAGAAACTGCAAGTGAAACTATATCATACTTTCTCAATCAATTTGATGCAAACACGAGAGATGATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTATGCTTGGCTTGCAGTATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACGGAGGAAGCTGTTATATCATTGACCAAAGCTGTGGATATACTGAGGATTACTCATGGAACAAATACTCCTTTTGTAAAGGAACTCTTGGTAATGTTGGAGGAAGCCCGTGCAGAAGCGTCTTTCAAATTGTCTTCCAAAGAGGAGTAG 1449 0.4037 MEDLQRALKDRNLTVSNVPGKGRSLFTTRDFYPGEVIISEEAYVCVPNNNNSSHKRCDGCFTTTNLSKCSRCHVVWYCGTACQKSEWKLHRLECEVLSRLDYDKRKSVTPSIRLMLKLYLRRKLQDEKIIPSTARDNYKLVEALVAHMSDITEEQLVLYAQMANLVHLILQWPEITIKEIAENFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRTASVRALQHVPKGTEVMISYIETAGSTVTRQKALKEQYLFACVCPLCSKSGQYDDVRENAILEGYRCKNEKCDGFLLRTTDGKAFQCQDCGLVRDKEEIKKIATEIKLLSEEASKPSSRGNYQEAITIYTMIEKLQVKLYHTFSINLMQTREMILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPMLGLQYYTCGKLEWYLGDTEEAVISLTKAVDILRITHGTNTPFVKELLVMLEEARAEASFKLSSKEE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01556 482 Pfam MYND finger 57 94 IPR002893 -
Car05g01556 482 Gene3D - 56 106 - -
Car05g01556 482 SMART set_7 11 255 IPR001214 GO:0005515
Car05g01556 482 SUPERFAMILY TPR-like 345 447 IPR011990 GO:0005515
Car05g01556 482 Pfam SET domain 22 248 IPR001214 GO:0005515
Car05g01556 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 473 - -
Car05g01556 482 ProSiteProfiles SET domain profile. 11 249 IPR001214 GO:0005515
Car05g01556 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 473 - -
Car05g01556 482 SUPERFAMILY SET domain 10 248 IPR046341 -
Car05g01556 482 ProSiteProfiles Zinc finger MYND-type profile. 57 94 IPR002893 -
Car05g01556 482 Gene3D Tetratricopeptide repeat domain 402 480 IPR011990 GO:0005515
Car05g01556 482 Gene3D - 107 191 - -
Car05g01556 482 Gene3D SET domain 24 275 IPR046341 -
Car05g01556 482 Coils Coil 320 340 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car05g01556 SET 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01556 K11426 - gmx:100789518 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01556 05 60077467 60082703 Car05g01556 05 60077467 60082703 ECH