Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01546 atgAGTTTATCAGTTGGAACATCACTGTCAAGTTCTGTATCAAATTCAAATTTTTCAACAGGAAATTACAAGCTTATAATCACTTCTTCTGATGCAATTCTTCAATGGTATGGACAAACATATTGGAAACTTTCAATGGATTCAAAAGCTTACAAGAATTCAAATTATTCTGTTGAATACATGACAGTAAACACAACAGGTTTTTATGTCTTTGGTTATGATGAAAAAGTACTTGTTTATCAAATCGGTTTATCAGTATCCAATTTTCACGTTGTGAAATTGGATTTCAATGGACAGTTTACAATTAGTAGCTTTTCAGGAACAAATTTGAAGCAGGAATTTGTTGGTCCAGATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGAGTTGGTTTATGTACTGATAACACTTTATCTTCTTCACCACTTTGTTCTTGTCCTCCAAATTTTCATGTTGCATCAGTTTTTTTACTGATATGGAGAAAATTCAGAAAGTCAAAGAATCAAGATGTGAAATTAGGGAAATCAATTTCAATCTCACATTCTTCAGGGGACTTAGATCATGAAGCATTCTACATTCCTGGATTACCTTCAAGGTTTGATTACGAAGAACTAGAGGTAGCTACTGAGAATTTCAAGACTCTGATAGGATCTGGTGCATTCGGCGTAGTGTACAAAGGTGTTTTACCTGATAATAATATTGTAGCAGTAAAGAAAATAATGAACATTGGAGTTCAAGGTAAAAAAGATTTTTTTACTGAGATTGCTGTCATTGGTAACATTCACCATGTTAATTTAGTTAGACTGAAAGGCTTTTGCGCTCAAAGGGGACACAGAATGTTGGTTTACGAGTACATGAACCGCGGTTCACTCGATCGAAACCTCTTCGGTAATGGACCGGTTTTGGAATGGCAAGAGAGGTTGGATGTTGCACTCGGAACAGCGCGTGGACTTGCATATCTTCACAGTGGATGTGATCAGAAGATAATTCACTGTGATATAAAACCAGAGAATATTCTTCTGCATGATCAGTTTCAAGCTAAGATATCTGATTTTGGACTTTCGAAACTTCTTAGTCCTCAACAATCTGGTTTGTTTACAACAATGAGAGGAACTCGTGGTTATCTTGCACCAGAGTGGTTAACAAATTCAGCAATTTCTGAAAAAACAGATGTATATAGTTTTGGAATGGTGCTTCTTGAATTGGTTAGTGGAAGGAAAAACTGTTCTTTTCGATCAAGAAGTCGAAGTCGTCATAGCAATATGGATGAGAATAATAGTACTAATAATAGTGGAAATTCTTCGAACTCGTCGGCAACAGGACTTGTTTATTTTCCATTATATGCATTAGAGATGCATGAACAAAGGAGTTACATGGATTTGGCTGATCCAAGGTTAGAAGGACGTGTTACATTTGATGAAGTGGAGAAACTTGTTAGGATTGCATTGTGTTGTGTTCATGAGGAACCAACACTTAGGCCAAACATGGTTAGTGTGGTTGGAATGTTGGAAGGTGGGACTTCATTGCCACAACCTAGGATGGAATCTTTGCATTTCTTGAGGTTCTATGGTCGTAGGTTTAGTGAGGCTTCTGTTATAGAAGAAGATAATGAGAATGGTTCTGTGATAATGATTCAACAACAACCACGTGATTCAACACCTATCATTAGTGCCTTTTCTTATATATCTTCACAGAATATCTCAGGGCCAAGATAG 1716 0.3642 MSLSVGTSLSSSVSNSNFSTGNYKLIITSSDAILQWYGQTYWKLSMDSKAYKNSNYSVEYMTVNTTGFYVFGYDEKVLVYQIGLSVSNFHVVKLDFNGQFTISSFSGTNLKQEFVGPDDGCQIPLACGRVGLCTDNTLSSSPLCSCPPNFHVASVFLLIWRKFRKSKNQDVKLGKSISISHSSGDLDHEAFYIPGLPSRFDYEELEVATENFKTLIGSGAFGVVYKGVLPDNNIVAVKKIMNIGVQGKKDFFTEIAVIGNIHHVNLVRLKGFCAQRGHRMLVYEYMNRGSLDRNLFGNGPVLEWQERLDVALGTARGLAYLHSGCDQKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPQQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRKNCSFRSRSRSRHSNMDENNSTNNSGNSSNSSATGLVYFPLYALEMHEQRSYMDLADPRLEGRVTFDEVEKLVRIALCCVHEEPTLRPNMVSVVGMLEGGTSLPQPRMESLHFLRFYGRRFSEASVIEEDNENGSVIMIQQQPRDSTPIISAFSYISSQNISGPR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01546 571 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 154 - -
Car05g01546 571 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 152 571 - -
Car05g01546 571 Gene3D Phosphorylase Kinase; domain 1 187 285 - -
Car05g01546 571 ProSiteProfiles Protein kinase domain profile. 210 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01546 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Car05g01546 571 ProSitePatterns Protein kinases ATP-binding region signature. 216 239 IPR017441 GO:0005524
Car05g01546 571 Gene3D Transferase(Phosphotransferase) domain 1 286 513 - -
Car05g01546 571 Pfam Protein kinase domain 213 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01546 571 MobiDBLite consensus disorder prediction 413 436 - -
Car05g01546 571 SMART serkin_6 210 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01546 571 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 3 154 - -
Car05g01546 571 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 152 571 - -
Car05g01546 571 SUPERFAMILY Protein kinase-like (PK-like) 192 503 IPR011009 -
Car05g01546 571 MobiDBLite consensus disorder prediction 422 436 - -
Car05g01546 571 CDD STKc_IRAK 216 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01546 Car-Chr5 59987720 59990518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01546 193 512 Receptor kinase-like Gene Family AT5G20050 40.841 1.41e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Car05g01546 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01546 - - aprc:113853223 628.246