Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01542 ATGTCTTTAAGTCCTCCAAGAGAGAGAATCAACAACCAACGTAGGAACTTCCAACTCTACTGGTGCTTCCAGTGCAACCGCACGGTCCGCGTCGCACCTGATAACTCCTCCAATTTAATATGTCCACGATGCTTCGGCCAATTCATATGCGAAATCAACATACCAACACCAAGACTCGTCGTAGACTTCACCGCACACGATCCCTCCCCAGAATCGCGTTTACTAGAAGCACTTTCCCTCATGCTAGAACCACCCATCCGCCGCTTCAACCCTGAAACCCAAACCCGACGCCCACGTCGTTCCACACAAGAAGTTCCCGTACACCGCCACACAGACGATCCAGTccgaaccgaacccgaacccggaatccaacaccgCCCTCGCACGTGGGTCATTCTTCAACCCATCGGTTCTCCCAATTCCGATTCAAACACATTCCAACCCGTTATTACACGTGGACGACAGGGACCATTGCCACGTGGCGTTGATGCAAGAGACTACTTTTTCGGTCCCGGATTTAACGAACTAATCGACCAGATAACAGAAAATGATCGGCAGGGACCACCGCCGGTGCCGGAAAGAGGTATAAACGCGATTCCGACGGTGAAAATCGAGAGCAAGAATCTGAAAGAGAATTCTCAATGCCCTGTTTGTCAGGAAGAATTTGAAATTGGTGGTGAAGCGAGGGAACTTCCATGCAAACATATATATCATTCAGATTGTATTGTTCCATGGCTTAGGCTTCATAATTCTTGTCCAATTTGTCGTCAAGAGCTTCACGTATCTGATGAAGATGAAGAAGGGGAAGGTGAAGGTAGGTTACGTAGGTGCTTCAGGTGGACTCGACTTTCGTCTATTTGGCCTTTCAATGGAAGGTATCGAAGAGTTCACCCTCAAAGAGACAATGGTCATGCTTCTTCTTCTTCAAGGGGTGATAATTAA 942 0.4607 MSLSPPRERINNQRRNFQLYWCFQCNRTVRVAPDNSSNLICPRCFGQFICEINIPTPRLVVDFTAHDPSPESRLLEALSLMLEPPIRRFNPETQTRRPRRSTQEVPVHRHTDDPVRTEPEPGIQHRPRTWVILQPIGSPNSDSNTFQPVITRGRQGPLPRGVDARDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSQCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQELHVSDEDEEGEGEGRLRRCFRWTRLSSIWPFNGRYRRVHPQRDNGHASSSSRGDN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01542 313 SMART ring_2 215 255 IPR001841 -
Car05g01542 313 PANTHER - 9 274 - -
Car05g01542 313 SUPERFAMILY RING/U-box 196 262 - -
Car05g01542 313 Pfam Ring finger domain 214 256 IPR001841 -
Car05g01542 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 274 - -
Car05g01542 313 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Car05g01542 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 262 IPR013083 -
Car05g01542 313 MobiDBLite consensus disorder prediction 90 122 - -
Car05g01542 313 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Car05g01542 313 CDD RING-H2_RNF126_like 214 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01542 Car-Chr5 59904417 59905358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01542 187 301 C3H Transcription Factor Family AT1G68180 43.333 3.11e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01542 K11982 - gmx:100787399 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01542 05 59904417 59905358 Car05g01542 05 59904417 59905358 ECH