Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01540 ATGGTTAAGTTAGAGAGCAAGAAAGTAAAAAAAGAACAATTATCAAAGCCAATATCAGATAGCAAGAAAAAGTACAAAGGAGTGAGAATGAGGAGTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACTCCAGAAGCAGCAGCTAGAGCTTATGATGCTGCACTTATCTGTCTTAAAGGTTCATCAGCAACAAATCTCAATTTCCCTTTAACTTGTTCACATTACAACATTCCTCAAGATACTAATAATGTTACTGTCATGTCTCCCAAATCAATTCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGATAATAATGTCAATGTCAACAACATTAATACTCCTTCATCATCAATGGCTTCCTCTCCTTCCGATCAAATCGATGATGATGTTTCGCTCATGTCGTCTTTTGATCAAGCTAATGAATCAATGGCTATGATGGAATTGGAAAGTTGGTATGGTTTAGAAGGTTTACAATCTCCTAAATATATTGATCAAATGTTGCTAAATGCTTCTTTCTTTGATGTTGATTCGTCGCTTCTGCTTGATGATCTGTATGAAGAAAGTGAAATTCGTTTGTGGAACTTCTGCTGA 636 0.3585 MVKLESKKVKKEQLSKPISDSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALICLKGSSATNLNFPLTCSHYNIPQDTNNVTVMSPKSIQRVAAAAANSFIDNNVNVNNINTPSSSMASSPSDQIDDDVSLMSSFDQANESMAMMELESWYGLEGLQSPKYIDQMLLNASFFDVDSSLLLDDLYEESEIRLWNFC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01540 211 Gene3D AP2/ERF domain 23 84 IPR036955 GO:0003700|GO:0006355
Car05g01540 211 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Car05g01540 211 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Car05g01540 211 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Car05g01540 211 MobiDBLite consensus disorder prediction 1 21 - -
Car05g01540 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 211 - -
Car05g01540 211 SMART rav1_2 24 88 IPR001471 GO:0003700|GO:0006355
Car05g01540 211 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Car05g01540 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 12 211 - -
Car05g01540 211 ProSiteProfiles AP2/ERF domain profile. 24 82 IPR001471 GO:0003700|GO:0006355
Car05g01540 211 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01540 Car-Chr5 59881191 59882301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01540 25 210 AP2-EREBP Transcription Factor Family AT1G21910 51.515 3.41e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car05g01540 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01540 - - cam:101495993 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01540 05 59881191 59882301 Car05g01540 05 59881191 59882301 ECH