Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01504 ATGGCGCCAAGAAAAAGACACTTGCAATTGCATCAATTAAACCATCCATTTGATGATGATTATCCATTTGAAGCAGTATTGAGTGGTTCATGGCAACCTGTGAAGCTGATAAGAATTGAGTCAGGAACTACAGCCTTACATTTCATTCATACTCGCCAAATACAAAACCCCTTGTCACCAGATATTAGGATAAAATCAAGGAAAGCTACTTTATCTGATTGCTCCAGCTTTTTACGACCTGGGATTGACATTTCTGTGCTCTTAGGCCTTCGATTCATTCATGATTCAGATCAATTTACTTCTATCCCTGTGTGGGTTGATGCTAGAATAGATTCCATACAGAGACAGCCCCACCATCAATCAAACTGCTCCTGTCAATTTTATGTAAACTTCTATGATCAACAAGGTTCACTTGGTTCAGAGATAAAATCTCTTAACAAAGAGGTCATACCAATTGGAGTAGACCAAATTTCAATCATCCAAAGGCTTGAACATTATTGTGTAAATAAGCCTTATAGATGGTCTTCATCAGAAGATTGCATTTCATTATCACAATCTAGATTCCTCTTAGCCAAAGTTTTAAATGATCTTTCATGGTTTGTTGCTACATCTGTTTTAAAGAAGGTTTCATTCAACATAACATCTATCCAAAACAAGATTGTGTATGAAGTTATGGGAAATTATGCTAATACTACTATTAGTACTTCTCATATATATATTAAAGTTTACACAAGAAGGAAAAAAACCAATGCAGTGAAATTAGATGATGCTAATCAAAATGATGATAAAAAAGCAGAGAAGAATAGTGATGATGTGTTGAATTTGGATTCATGCAATGAGGCTGCAATATCATGTGATGTAGAAGTTGATGATAATGTTACTTTAATGCATTATTATAATTTCTGCAGACATAAGCTTAAGAGGAAGCGTATTGATCATGGTTTTGATGACATGGATTTTGAAAACAAATGGGAAGGGATACATTTCAGAAAAGGAGTTCAACAGAAAAGATATACGTTGAATGCTGATGCATGCAAGGAAATAATAGATTCATACATGAAGAATATTGATAGCTTACCAACTGAAGAAGAGGTAACTATTAATGAGCATGAGCAGATGCTGAAAACAAGCAAGTTGGAGCCAAAGGAGGAAGAAAAAGTACCGAAAAGCCATGATGTTGAGGAAGAATTTTTTGATGATTTGGATGTTTTGTGGGAAGAAATGGATACAGCTTGGTTGTCAAGTAATCTTCTTGATGGAACCGAGGGTTCAAATGCTGAGAAGAAAGAATTCAAGAACACTTGTGAACATGACTATAAATTGGATGAAGAAATTGGAATATACTGCCTTCGATGTGGCTTTGTGAAAACCGCGATACGAGACATTTCTGAAATCGTTGTGGAAAATCCAAAATGGTATAGAGAGGAAAAAGAAAACAGTGGAGAACAAAAGGAAAATGAATCAGAGGCAAAAGTTGATAAAAATGATGATGATTCACATGTGTTCTCAAATCATTCTACTCCTCCTGATGAATCACTGTGTAAAGAATATGACAATGTTTGGTCATTAATTCCTGAACTAAAAGAAAAAATGCATGCACACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCTATTGAACCAAAACTCATGAAAGTTGAATCCAAAACAAGTGGTGGTTGTGTTATATCTCATGCTCCTGGAGCCGGAAAAACCTTTCTCATCATTTCTTTTCTTTTAAGTTATATGAAATTATTCCCTGATAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCAATGCCAGTGTACCTAATTCACGGTCGACGATCATGGAGAGGCTCGACAACAAAACCGATTTTTCTTCCGGGTGTTCCAAGACCAACTGGTGATGTCAAACATGTTTTGGATTGCCTTACAAAGATACAAAAGTGGATTTCACAACCAAGTGTTCTTGTCATGGGATACACTTCATTTTTAACAATGATGAGAGAAGATACAAAATTTGCACACAGAAAGTACATGTCTAAAACATTGAGGGAAAGCTCTAATATCTTGATTCTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAACTCAGAATATTACTTTCTGGCACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTCGACCGATGTTTGTCCGCAAAGTACTTAAAGAATTAGATCCTAAGTTTAACAGGAGAGGGAGGATAGCGAAGAAAGCGCGGCATTTACTCGAGGCACGTGCTAGAAAATTCTTCTTGGATAACATTGCCAAGAAAATTAACTCGGACATCGACGAAGAAAGGATGATAGGACTAAACGTCCTGCGAAAAATCACGACAGGTTTTATCGATGTTTATGACAGTGGAAATTCAGATACTCTTCCGGGTCTACAAATCTATACACTGCTTATGAATACTACTGATATTCAAAAAGAGATGCTGCAAAAACTACAGAACAAAATGTTTGAGTGCACTGGATACCCTCTTGAAATTGAGCTTTTGATAACACTTGGATCAATACATCCATGGTTGATAAAAACAGCATCATTCGCTTCGAGGTTTTTCGAGGAGGAAGAACTTAAGAAACTAGAAGGATGCAAATTTGATTTAAAAAAAAGTTCAAAAGTAAGATTTGTTATGAGCCTAATCTCACGTGTGGTGAAAAATGAAAAAGTGATTATCTTCTGTCACAACCTTGCACCTGTGAGGCTATTAATAGAGTTATTTGAGAGTTATTTTCAGTGGGAAAATGGTAAAGAGATTCTGTTACTAACTGGTGAACTAGAGTTATATGACAGAGGGAAAGTGATTGAAAAATTTGAAAATCCACGTGGAAGTTCAAAGGTACTTGTTGCTTCAATAACAGCTTGTGGTGAAGGTATAAGTTTAACAGCAGCTTCAAGAGTAATATTTTTGGACTCAGAGTGGAATCCTTCGAAAACAAAGCAAGCTATTGCACGTGCTTTTAGGCCTGGTCAAGAGAAAATGGTGTATGTTTATCAGTTGTTGATAACTGGATCAATGGAGGAAGATAAGTATAGAAGGACTACTTGGAAAGAGGAAAGAGTGGGTTTCTTGTTTGATTTTTAG 3204 0.3605 MAPRKRHLQLHQLNHPFDDDYPFEAVLSGSWQPVKLIRIESGTTALHFIHTRQIQNPLSPDIRIKSRKATLSDCSSFLRPGIDISVLLGLRFIHDSDQFTSIPVWVDARIDSIQRQPHHQSNCSCQFYVNFYDQQGSLGSEIKSLNKEVIPIGVDQISIIQRLEHYCVNKPYRWSSSEDCISLSQSRFLLAKVLNDLSWFVATSVLKKVSFNITSIQNKIVYEVMGNYANTTISTSHIYIKVYTRRKKTNAVKLDDANQNDDKKAEKNSDDVLNLDSCNEAAISCDVEVDDNVTLMHYYNFCRHKLKRKRIDHGFDDMDFENKWEGIHFRKGVQQKRYTLNADACKEIIDSYMKNIDSLPTEEEVTINEHEQMLKTSKLEPKEEEKVPKSHDVEEEFFDDLDVLWEEMDTAWLSSNLLDGTEGSNAEKKEFKNTCEHDYKLDEEIGIYCLRCGFVKTAIRDISEIVVENPKWYREEKENSGEQKENESEAKVDKNDDDSHVFSNHSTPPDESLCKEYDNVWSLIPELKEKMHAHQKKAFEFLWQNIAGSIEPKLMKVESKTSGGCVISHAPGAGKTFLIISFLLSYMKLFPDKRPLVLAPKTTLYTWRKEFKKWKIPMPVYLIHGRRSWRGSTTKPIFLPGVPRPTGDVKHVLDCLTKIQKWISQPSVLVMGYTSFLTMMREDTKFAHRKYMSKTLRESSNILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPMFVRKVLKELDPKFNRRGRIAKKARHLLEARARKFFLDNIAKKINSDIDEERMIGLNVLRKITTGFIDVYDSGNSDTLPGLQIYTLLMNTTDIQKEMLQKLQNKMFECTGYPLEIELLITLGSIHPWLIKTASFASRFFEEEELKKLEGCKFDLKKSSKVRFVMSLISRVVKNEKVIIFCHNLAPVRLLIELFESYFQWENGKEILLLTGELELYDRGKVIEKFENPRGSSKVLVASITACGEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYQLLITGSMEEDKYRRTTWKEERVGFLFDF 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01504 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 276 1058 IPR044567 GO:0080188
Car05g01504 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 260 IPR044567 GO:0080188
Car05g01504 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 757 IPR027417 -
Car05g01504 1067 SMART helicmild6 945 1030 IPR001650 -
Car05g01504 1067 CDD SF2_C_SNF 905 1041 - -
Car05g01504 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 276 1058 - -
Car05g01504 1067 Gene3D - 833 1063 IPR027417 -
Car05g01504 1067 MobiDBLite consensus disorder prediction 474 510 - -
Car05g01504 1067 SMART ultradead3 527 771 IPR014001 -
Car05g01504 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 556 755 IPR014001 -
Car05g01504 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 1063 IPR027417 -
Car05g01504 1067 Pfam SNF2-related domain 543 800 IPR000330 GO:0005524|GO:0140658
Car05g01504 1067 Gene3D - 505 796 IPR038718 -
Car05g01504 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 916 1067 IPR001650 -
Car05g01504 1067 MobiDBLite consensus disorder prediction 474 504 - -
Car05g01504 1067 Pfam Helicase conserved C-terminal domain 913 1029 IPR001650 -
Car05g01504 1067 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 23 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01504 Car-Chr5 59370581 59375808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01504 927 1048 RAD5 or RAD16-like Gene Family AT5G05130 37.398 3.12e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car05g01504 SNF2_N 2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01504 K10875 - gmx:100811703 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01504 05 59370581 59375808 Car05g01504 05 59370581 59375808 ECH
Car05g01504 05 59370581 59375808 Car02g01736 02 46457718 46465657 PCT