Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01498 ATGGATTCCGACTTACACAACAAAGCGTTAACAAGCACTCGCTTTTCTGAACTCAACCCACCACTTTCTGATCCCGTTCTCCAAGCTCTCTCTCATTCAGGTTTCGACTTCTGCACTCCCGTTCAAGCCGCCACCATTCCTTTGCTCTGCACCTACAAAGACGTTGCCGTCGACGCCGCCACCGGTTCAGGAAAAACCCTAGCTTTTGTCATTCCACTTGTCGAGATTCTTCGCCGCTCCGCTTCTAATCCCAAACCTCACCAGGTTCTGGGAGTAATTATATCTCCTACAAGAGAACTATCATCCCAAATATATCAAGTTGCACAACCTTTCATTTCAACTTTATCCAATGTTAAGTCGATGCTACTTGTTGGTGGAGTGGATGTAAAAACAGACATGAAGAAAATTGAGGAAGAAGGGGCAAATATATTAATTGGCACCCCTGGCCGATTACATGACATTATGAATCGAATGGATGTCTTGAATTTCAAAAGCTTTGAGattttgattttgGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGTTAAATGCAATCATAACTCAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCAAAAGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAAACAGATAATGATCCTTCAGCATCAAAGCAGCTCGAGTCTTCGAAGACACCTTCAGGTCTTCACATTGAGTACTTGGAATGTGAAGCAGATAAGAAGCCGTCACAGCTAGTAGATTTCCTTATTAAGAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGACTATTGGGGAGTTGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCCCTCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAGGCCTTAGCTTCATTTACATCGCTTTCAAATGGAATTCTTCTCTGTACGGATGTTGCAGCACGTGGGCTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATAGAGTTGGTCGAACTGCTCGGTTGGGTAAACAAGGACATGCTGTTGTGTTCTTATTACCAAAGGAGGAATCTTACGTCGAATTTCTTCGTATAAGAAGAATTCCTCTTCAAGAGAGAAGATGCTCTGACGATGTATCTGATGTTACTTCCGAGATTCGTTCTGCTGCAGCGAAAGACCGGGATGTCATGGAGAAGGGAGTTAGGGCATTTGTTTCTTACATCCGTGCTTATAAAGAGCATTGCTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAGCTTCCATTAGTGCCGGAGGTAAAGCGCCACTCGCTGTCCACTGAGGGATTTGAACCAGTTAAAGATATCAATTTGGTGGACATTAAGTTCAAGGATAAATCGAGGGAAAAACAAAGGAAGAAAAACCTTCAAGCAAAGAAAGAGACCAAAGAGAAAGAGCCAACACCTAAAAAACCAAAGAAAACTCCGGATGCTACTGTCATGAGGAAGAAAACAGCTAAACAGAGACGCGCTCAGCAGACAGTTGAAGACGAGGAAGAGTTGATGCAAGAGTACCGCTTGTTGAAGAAATTGAAGAAAGGAACCATAGATGAGGATGAATATGCTAAGTTGACAGGCACTGAGGAATTATAG 1764 0.4286 MDSDLHNKALTSTRFSELNPPLSDPVLQALSHSGFDFCTPVQAATIPLLCTYKDVAVDAATGSGKTLAFVIPLVEILRRSASNPKPHQVLGVIISPTRELSSQIYQVAQPFISTLSNVKSMLLVGGVDVKTDMKKIEEEGANILIGTPGRLHDIMNRMDVLNFKSFEILILDEADRLLDMGFQKQLNAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTDNDPSASKQLESSKTPSGLHIEYLECEADKKPSQLVDFLIKNRSRKIIIYFMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERRCSDDVSDVTSEIRSAAAKDRDVMEKGVRAFVSYIRAYKEHCCSYIFRWKELEIGKLATGHGLLQLPLVPEVKRHSLSTEGFEPVKDINLVDIKFKDKSREKQRKKNLQAKKETKEKEPTPKKPKKTPDATVMRKKTAKQRRAQQTVEDEEELMQEYRLLKKLKKGTIDEDEYAKLTGTEEL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01498 587 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Car05g01498 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 394 IPR027417 -
Car05g01498 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Car05g01498 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Car05g01498 587 PANTHER RNA HELICASE 25 586 - -
Car05g01498 587 MobiDBLite consensus disorder prediction 504 556 - -
Car05g01498 587 Gene3D - 2 227 IPR027417 -
Car05g01498 587 CDD SF2_C_DEAD 254 384 - -
Car05g01498 587 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Car05g01498 587 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Car05g01498 587 SMART ultradead3 34 234 IPR014001 -
Car05g01498 587 CDD DEADc_DDX55 26 224 - -
Car05g01498 587 Pfam Domain of unknown function (DUF4217) 415 472 IPR025313 -
Car05g01498 587 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Car05g01498 587 Coils Coil 538 565 - -
Car05g01498 587 Gene3D - 254 476 IPR027417 -
Car05g01498 587 SMART helicmild6 290 375 IPR001650 -
Car05g01498 587 SMART DUF4217_3 413 476 IPR025313 -
Car05g01498 587 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01498 Car-Chr5 59275742 59279909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01498 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.412 1.76e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01498 K14809 - gmx:100801482 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01498 05 59275742 59279909 Car05g01498 05 59275742 59279909 ECH