Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01496 ATGGGTGGTAACACAAATTCACCTTGTGCTTCATGCAAGTTACTTAGACGGCGTTGCACTAAGGATTGTATCTTTGCTCCTTATTTCCCTTCACATGATCCTCACAAGTTTGCAATTGTTCACAAGGTTTTTGGTGCCAGCAATGTTAGCAAAATGCTGCAGGAACTACCTTGTGACCAAAGAGAAGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAATGAGGGACCCAGTTTATGGTTGTGTCGGTGCCATATCCTATCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATGCTATGCATCCAGATGGAACATGAATATGATTCTCTCTCAAGAGAGACTATTTTTTGA 381 0.4173 MGGNTNSPCASCKLLRRRCTKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQELPCDQREDAVSSLVYEAHARMRDPVYGCVGAISYLQNQVSELQMQLAVAQAEMLCIQMEHEYDSLSRETIF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01496 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 5 117 - -
Car05g01496 126 Coils Coil 87 123 - -
Car05g01496 126 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Car05g01496 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 117 - -
Car05g01496 126 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01496 Car-Chr5 59262447 59262939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01496 1 116 AS2 family AT2G30130 85.345 1.67e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car05g01496 LOB 2.1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01733 02 46432782 46434097 Car05g01496 05 59262447 59262939 ECH
Car05g01496 05 59262447 59262939 Car05g01496 05 59262447 59262939 ECH
Car05g01496 05 59262447 59262939 Car02g01733 02 46432782 46434097 PCT