Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01484 ATGTCGAATCCAAATTCCAGATCATTAAACTGGCACTACACAGAGTTAGATGACAGAGACCTCGAAATAAGAGGCAGAACACtcttcttcgtcatcgtactcttctccattttccttctcgttattgttctcttcttctACACTCGTTGGGTCTGTCGCTACCACACTCACATAACAACCACCACACTCTCCGCCTCAATCCACGCGCCACCGCCTCCGCAACCGCAAGGACTTGACTCTGTTTCGATTAATAAACTTCCCATTATCCTTCACCAAGCTCCGGTTGACCCCGAAAACGGCGCGTGGGAGGACACGGAGTGCTGTATATGTTTAGGAGAGTTTAGAGACGGTGAGAAGCTTAAGGTTTTGCCAGGGTGTGAACACTATTTTCATTGTGAGTGTGTTGATAAGTGGCTAACTCATCAATCTAGTTGTCCACTTTGTAGAACTTCACTCCAAGTTGAAGAATCTTCTTTTCCTAAGATTTTGATTCAGGAACCACCCATTAGAATTGATATTCAATTCTAG 528 0.4015 MSNPNSRSLNWHYTELDDRDLEIRGRTLFFVIVLFSIFLLVIVLFFYTRWVCRYHTHITTTTLSASIHAPPPPQPQGLDSVSINKLPIILHQAPVDPENGAWEDTECCICLGEFRDGEKLKVLPGCEHYFHCECVDKWLTHQSSCPLCRTSLQVEESSFPKILIQEPPIRIDIQF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01484 175 SUPERFAMILY RING/U-box 101 155 - -
Car05g01484 175 Pfam Ring finger domain 106 149 IPR001841 -
Car05g01484 175 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Car05g01484 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 164 IPR044675 -
Car05g01484 175 CDD RING-H2_PA-TM-RING 106 149 - -
Car05g01484 175 SMART ring_2 107 148 IPR001841 -
Car05g01484 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 154 IPR013083 -
Car05g01484 175 PANTHER RING-H2 FINGER PROTEIN ATL66 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01484 Car-Chr5 59120444 59121731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01484 9 158 C3H Transcription Factor Family AT3G11110 42.581 3.51e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01484 - - gmx:100803278 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01484 05 59120444 59121731 Car02g01718 02 46285989 46286920 PCT