Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01482 ATGGAAAATTACTATGATTCTTGTGAGTGGCAACATTTGAGCACAAAGTTTCCTCTTCCTCCTGTGACTGTGAGTGTACCTCataataataataataataataataataataataTCTCTGACTCATCCTCTGCATCTTTTCAATATGATGAGTTAATTCATTCATGGAATTTACCTATTGAAGGGACTGCTGAAGATAGAGCAGCAACTGCTTCCAAGAGTCACAGTCAAGCTGAGAAAAGACGTAGAGACAGAATTAATACTCAACTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGAAGTGTAATAGATCATGTAAAAGATCTAAAGAGAAAAGCAATGGATATTAGCAGAGTCATCACAGTTCCAACTGAAATAGATGAAGTATCAATTGACTACAACCATGTTGAAGATGAAATATGCACTAACAAAATGAACAAATTCAAAGACAATAATAATATAGTCATCAAAGCTTCAGTTTGTTGCGACGATCGACCGGAACTGTTCACTGAACTAATCCAAGTCCTCAAAGGTTTGAGACTCACAGCAGTTAAAGCTGACATAGCAAGTGTTGGTGGAAGGATCAAAAGCATATTGGTTCTTTGTTCTAAAGATAGTGAAGAAAATGTTTGCATTAATACTCTTAAACAGTCTCTTAAATCAGCTGTCTCCAAAATTGCTTCATCATCATCAATCAGTTCTAATTGTCCTACAAGAAGTAAGAGGCAGAGGTTCTTTTTGCCTTCTCATTTCATATAG 789 0.3498 MENYYDSCEWQHLSTKFPLPPVTVSVPHNNNNNNNNNNISDSSSASFQYDELIHSWNLPIEGTAEDRAATASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDISRVITVPTEIDEVSIDYNHVEDEICTNKMNKFKDNNNIVIKASVCCDDRPELFTELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVSKIASSSSISSNCPTRSKRQRFFLPSHFI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01482 262 PANTHER TRANSCRIPTION FACTOR BHLH30 26 261 IPR045847 GO:0003700|GO:0006355
Car05g01482 262 CDD bHLH_AtAIG1_like 65 142 - -
Car05g01482 262 Pfam Helix-loop-helix DNA-binding domain 73 119 IPR011598 GO:0046983
Car05g01482 262 PANTHER TRANSCRIPTION FACTOR BHLH51 26 261 - -
Car05g01482 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Car05g01482 262 MobiDBLite consensus disorder prediction 65 85 - -
Car05g01482 262 SMART finulus 76 125 IPR011598 GO:0046983
Car05g01482 262 Gene3D - 64 127 IPR036638 GO:0046983
Car05g01482 262 CDD ACT_UUR-ACR-like 169 204 - -
Car05g01482 262 MobiDBLite consensus disorder prediction 24 43 - -
Car05g01482 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01482 Car-Chr5 59099411 59101512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01482 1 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.963 1.93e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g01482 HLH 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01482 - - gmx:100799687 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01482 05 59099411 59101512 Car05g01482 05 59099411 59101512 ECH