Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01472 ATGGCATCATCCAACTACATCCCGCCACTCTCCGACTCAGATTCCGACGGCGGTTCCTCCACCTCCGAACTCCTCCGCCACTCAGACCTCTCCGAATCCATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAATCAATGCCACCTCCGCCGACCTCTCCAAGATCCGATCCTTCCTCACATCCTCTTCCTCCGGCGCTCTCTCCTGCCTCATATGTCTCGAACGCATCAAACCCTCCGATCCCACTTGGTCCTGCACTTCCCTCTGCTTCGCTGTCTTCCACCTCTTCTGCATCCAAAGCTGGTCTCGTCAAGCTTCCGATCTCGCCGCTTCACGCGCCGTCACTCGCCTTTCCATTTCACAAGATCAAGCCTCCAACACAGCTCTCTGGAATTGCCCTAAATGTAGGTTTGAATATCCCAAAAGCCTCATCCCAAAAACTTACCTTTGCTTCTGCGGCAAATTGGAGAATCCTCCAAGTGATGATCCTTGGGTTTTACCTCATTCATGTGGTGACGTTTGTGGTAGATCTTTGAAGAACAATTGTGGACACCATTGTTTGCTTCTTTGTCATCCTGGGCCATGCCCTTCTTGCCCCCAACTCGTTAAAGCTCGTTGCTTTTGTGGGTCCCACCATGATGTTCGAAGATGTGGGTTCAAGGAGTTTTCTTGTGAAGCTCCTTGTTCCAAATTATTGGATTGTGGTGTTCACAAATGTGTTGAGATTTGCCACCGTGTTAGCTGTCCACCGTGTCGGGCGCGTGGCGTTTATCGGTGTCAATGTGGGAAGGTGAAGGAGGAAAAGGAATGTTGTGATCGTGTTTTTCAATGCGGCGAACCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAGAAAGGGTGTCATTTTGGTGAATGTGGTGCATGTCCTTTACAAGGGAAGAGAACATGTCCTTGTGGTAAAAGGGTCTATGAAGGAATGCCTTGTGATGCTCCTTTGCAAGTTTGTGGAGCTACTTGTGAGAAAACGTTGCCATGTGGATATCATAGGTGCCATGAACGATGCCATCGTGGACAGTGTATTGAGACTTGTAGGATTGTTGTGAAGAAGTGTTGTCGCTGTGGGAGCCTTAAGAAAGATGTACCTTGCTATCAAGATTTGACATGTGAGAGGAAGTGCCAGACGATGCGTGATTGTGGTCGCCATCCGTGTAAACGCCGCTGCTGTGATGGAGATTGCCCTCCTTGTTCAGAGATATGTGGCAGGAGGCTTCGCTGTAGGAACCATAAATGCCAATCTCCATGCCACAGAGGTGCTTGTGCTCCTTGTCCTATAATGGTGACAATTTCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCGAAATGTCCTAAACGGTGTCCTATTAAGCCTTTGTGCCGGCATGCATTAATCTGCAAGCCGCACAAATGCCATTATGGGGCCTGCCCTCCTTGTCGCCTACCTTGTGCAGAAGAGTACCATTGTGGCCATACGTGCAAATTAAGGTGTCATGGTGCTAGGCCTCCTCCCAATCCAGAGTTTACTCTCAAACCAAAGAAAAAGAAGTTTATACAACAAAGTGAAAGTGTTCCCGGCACTCCGTGCCCTCCTTGCCCAGAACTAGAATGGAGATCGTGTGTTGGGCAGCACATCGGAGCAGAGCAAATGATGGTCTGCTCTAATAAATCACAATTCTCCTGTGAAAATTTATGCGGTAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAACCGGTCTTCCACAAACCAGTTAACGAGAAGTGAGGCTTGTGAAGATTGTTCGCTTTCTTGCCAAAAGGAAAGAAAGCCTGCGTGTCAACATCACTGCCCTCGGCGATGTCATCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGTTTTCGAGTGCATTTATTACAACAGCCTTTCGGCAAAGGATCAAGAGACTGCCCGTTCATGCGGTGGACCGTGTCACAGAAAGATGCCAAATTGTACACATCTATGCCCAGAGACATGTCATCCTGGTCCATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCACCGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGCTTTGTCAAGACGTTCAAGCAGAATATAATCGTTCCGATTGCCAGCCAAGCGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTACGCAAATCTCGAGTTACAGTGGTAAAGGAGCCAGATAATGAAAAATCAGGTCCAAAGCGACGTAAAAGGAAGGAGCGGGTAGTAGAATCTAAGGAACCGACAGTACTACAGAAAATTATTTCCAGAACCAAGCAGTTTCTTCTATTTGTTTTTTTCTTGGTCATACTTGTTGCTGCCACTTATTATGGGTACAAGGGACTTCTACAGCTCAATGATTGGATGAATAAAGTTGACGAACAAAGACATAAATCTTCGCGAATTAGATGA 2607 0.468 MASSNYIPPLSDSDSDGGSSTSELLRHSDLSESIFKSYFNFSGHSSINATSADLSKIRSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAASRAVTRLSISQDQASNTALWNCPKCRFEYPKSLIPKTYLCFCGKLENPPSDDPWVLPHSCGDVCGRSLKNNCGHHCLLLCHPGPCPSCPQLVKARCFCGSHHDVRRCGFKEFSCEAPCSKLLDCGVHKCVEICHRVSCPPCRARGVYRCQCGKVKEEKECCDRVFQCGEPCEKKLSCGKHVCEKGCHFGECGACPLQGKRTCPCGKRVYEGMPCDAPLQVCGATCEKTLPCGYHRCHERCHRGQCIETCRIVVKKCCRCGSLKKDVPCYQDLTCERKCQTMRDCGRHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKRCPIKPLCRHALICKPHKCHYGACPPCRLPCAEEYHCGHTCKLRCHGARPPPNPEFTLKPKKKKFIQQSESVPGTPCPPCPELEWRSCVGQHIGAEQMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHALENRSSTNQLTRSEACEDCSLSCQKERKPACQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQETARSCGGPCHRKMPNCTHLCPETCHPGPCPNPEKCSKKVTVRCKCQTLKKEWLCQDVQAEYNRSDCQPSDIPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSRVTVVKEPDNEKSGPKRRKRKERVVESKEPTVLQKIISRTKQFLLFVFFLVILVAATYYGYKGLLQLNDWMNKVDEQRHKSSRIR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01472 868 CDD NF-X1-zinc-finger 333 382 - -
Car05g01472 868 CDD NF-X1-zinc-finger 621 662 - -
Car05g01472 868 SMART znfxneu3 184 202 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 236 255 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 210 232 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 696 717 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 509 554 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 486 501 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 396 415 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 343 363 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 SMART znfxneu3 591 623 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 CDD NF-X1-zinc-finger 172 220 - -
Car05g01472 868 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 12 865 - -
Car05g01472 868 MobiDBLite consensus disorder prediction 1 23 - -
Car05g01472 868 CDD NF-X1-zinc-finger 279 326 - -
Car05g01472 868 MobiDBLite consensus disorder prediction 787 806 - -
Car05g01472 868 CDD NF-X1-zinc-finger 386 434 - -
Car05g01472 868 CDD NF-X1-zinc-finger 413 461 - -
Car05g01472 868 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 417 441 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 236 254 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 184 201 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 509 518 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 396 414 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 591 601 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 634 650 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 Pfam NF-X1 type zinc finger 343 361 IPR000967 GO:0005634|GO:0008270
Car05g01472 868 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 12 865 IPR034078 GO:0003700
Car05g01472 868 CDD NF-X1-zinc-finger 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01472 Car-Chr5 58948785 58955264 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Car05g01472 zf-NF-X1 0.00039 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01472 K15683 - gmx:100799540 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01472 05 58948785 58955264 Car05g01472 05 58948785 58955264 ECH