LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g01453	ATGAGCTTCTTTTATTTGGTATTAACTTTATATATAAACAGACAATTTCCTTCATGTGAGACCAACTTCAAGACTAACGACAACAACATGCGACGACAACAATTTAACCTCTTGATTACTTCCTTGTTGTTATGTTCATGGAGCTTTGTTGTGACACAAGCTGACCCTGAAACACATTTAATCAACAAAGGTTGTAGTCAATACAACGCGACCAACTTGTCCAATTTCTACCAAAATCTAAACACAACTTTGTCAGACTTGAAATCACAGGTGGGGAATAAAAACAAGCATTTTGCAACGGCACAATTAGCCAGGGGAGAAAACCCTGTTTATGCTCTGTTTCAGTGTAGGAATTATCTCTCCAATTCTGATTGCTCCGCCTGTTTCCAAGTCGCCGCCGCACAAATTCGTAATTGCTCCGCTGGTTCCAACGGTGCTCGTGTCATTTATGATGGTTGCTTCCTTAGGTATGAGAGCAGTGGCTTCTTCGACGAAACAACTCAGCTTGGCAACGGTGTGATATGTGGAAATGAGACAGTAAATGGAGCCACTGCTCTTACTTCAGCTGCACAACAAGCTCTTCGTGATCTACAAACAGCAACACCCAAAATTCCTGGTTATTATGCAGCTACAAAGACACCATTTGGAGGAAATTCAATCTATGCCATTGCACAATGTGCTGAAACAGTCACTGAAAGTGGTTGTTTGGATTGCTTGAAAGTTGGATTCAACAATATAAATAATTGTTTTCCTGATGCAGATGGTAGGGCTTTTGATGCAGGCTGTTATATCAGATACTCTGAGGAATCTTTCTTTGCTGATAACCAGACTATTGATATCACACCCTTCTTAAACCAAGGAGGTTCAAGTAAGAAGAGGGCCATTATTGGTGGTGTTGTAGGAGGTGTAGCCTTTGTTGTGATCCTCCTTGCACTACTATTTGTTTGGCTTAGGCTCAACAAGAAACCCAAGAGACTTCCTATAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTATTTACAGATATAAAGATTTGAAGTCTGCTACAAAAAATTTTAATGATGAAAATAAATTGGGAGAAGGAGGTTTTGGAGATGTATACAAGGGAACTCTGAAAAATGGTAAAATAGTTGCTGTCAAGAAATTGATATTAGACCATTATGGCAAGATGGATGGACAATTTGAAAGTGAAGTGAAGCTCATAAGTAATGTTCATCACCGGAATCTTGTTCGACTTCTCGGATTTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAAAAGCCTTGACAGATTCTTATTTGGTGAAAAAACGGGTTCCCTCAattggattcaaaggtatgatataattttaggcacagcaaggggattggcctatttgcatgaagatttctatgtttgcatcatacatagggatataaagactagcaatattctcttggatgacgatcttcaacctagaattgctgattttggtttggcaagacttctgCCAGAAGATCAAACTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACTGCACCAGAATATGCTATCCATGGTCAGTTATCAGTGAAGGCTGATACCTACAGTTTTGGTGTAGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGCAGCGAGTTGCGAGATGACCCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATACGAGGGAGAAAGGCACTTGGAGTTGGTTGACAAGACATTAAACTCAAGTGACTATGATGCAGAAGAAGTGAAGAAAGTTATAGAGATTGCTTTGTGTTGCACTCAAGCATCAGCTGCAACAAGACCAACTATGTCTGAAATAGTAGTTCTACTCAAAAGCAAGAACTTGGTGGAGCATATAAGGCCATCCATGCCTGTCTTTGTTGATTCTAACTTGAGGCCAAGGACAAACAATTCTACCTTAGctgcttcctctacatctaatgctactgcttctccttctgTATTATCAGCTAGATGA	2025	0.3605	MSFFYLVLTLYINRQFPSCETNFKTNDNNMRRQQFNLLITSLLLCSWSFVVTQADPETHLINKGCSQYNATNLSNFYQNLNTTLSDLKSQVGNKNKHFATAQLARGENPVYALFQCRNYLSNSDCSACFQVAAAQIRNCSAGSNGARVIYDGCFLRYESSGFFDETTQLGNGVICGNETVNGATALTSAAQQALRDLQTATPKIPGYYAATKTPFGGNSIYAIAQCAETVTESGCLDCLKVGFNNINNCFPDADGRAFDAGCYIRYSEESFFADNQTIDITPFLNQGGSSKKRAIIGGVVGGVAFVVILLALLFVWLRLNKKPKRLPIGDILGATELKGPVIYRYKDLKSATKNFNDENKLGEGGFGDVYKGTLKNGKIVAVKKLILDHYGKMDGQFESEVKLISNVHHRNLVRLLGFCSKGQERILVYEYMANKSLDRFLFGEKTGSLNWIQRYDIILGTARGLAYLHEDFYVCIIHRDIKTSNILLDDDLQPRIADFGLARLLPEDQTHLSTRFAGTLGYTAPEYAIHGQLSVKADTYSFGVVVLEIISGQKSSELRDDPDGEFLLQRAWKLYEGERHLELVDKTLNSSDYDAEEVKKVIEIALCCTQASAATRPTMSEIVVLLKSKNLVEHIRPSMPVFVDSNLRPRTNNSTLAASSTSNATASPSVLSAR	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g01453	674	Pfam	Protein kinase domain	355	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g01453	674	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	52	670	-	-
	Car05g01453	674	Gene3D	Transferase(Phosphotransferase) domain 1	432	637	-	-
	Car05g01453	674	Gene3D	-	171	271	IPR038408	-
	Car05g01453	674	Gene3D	-	57	162	IPR038408	-
	Car05g01453	674	ProSiteProfiles	Protein kinase domain profile.	355	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g01453	674	SMART	serkin_6	355	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g01453	674	ProSiteProfiles	Gnk2-homologous domain profile.	58	162	IPR002902	-
	Car05g01453	674	SUPERFAMILY	Protein kinase-like (PK-like)	339	648	IPR011009	-
	Car05g01453	674	Pfam	Salt stress response/antifungal	65	159	IPR002902	-
	Car05g01453	674	Pfam	Salt stress response/antifungal	184	268	IPR002902	-
	Car05g01453	674	MobiDBLite	consensus disorder prediction	653	674	-	-
	Car05g01453	674	ProSitePatterns	Protein kinases ATP-binding region signature.	361	384	IPR017441	GO:0005524
	Car05g01453	674	CDD	STKc_IRAK	361	627	-	-
	Car05g01453	674	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	52	670	-	-
	Car05g01453	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Car05g01453	674	Gene3D	Phosphorylase Kinase; domain 1	333	431	-	-
	Car05g01453	674	ProSiteProfiles	Gnk2-homologous domain profile.	168	271	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g01453	Car-Chr5	58764711	58769902	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g01453	30	674	Receptor kinase-like Gene Family	AT1G70520	35.650	2.73e-120	371

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Car05g01453		Pkinase	2.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g01453	-		-	gmx:100813585	961.059