Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01447 ATGAAGCTTTCAACATCAGGGTTGGGTCAACAGGGACATGAAGGAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCTGGGCCCTTAGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAACAGGTATCTGCCACAACTAACAGAGAAATTGATGGGCATATACCAAATTATCCTAGCTTGCCACCTCAGTTGGTTTGCCAACTTCACAATGTGACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCCCAAATGACACTACAGCCGTTGACTCCGGACGAGCAGAAGGATACGTTTCTTCCTATGGAATTAGGCATTCCAAGTAAGCAGCCGTCAAACTATTTTTGCAAGACTTTAACAGCCAGTGACACTAGCACACACGGAGGATTCTCTGTTCCTCGTCGTGCGGCTGAGAAAGTGTTCCCTCCACTGGATTTCTCGCAGCAACCACCAGCACAAGAACTGATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTTGCTGGAGATTCTGTCCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACCGTAATGCCATCATCAGTTCTTTCCAGTGACAGTATGCACATTGGACTTCTTGCAGCCGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGCAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCAAAATACATCAAAGCCGTGTATCATACACGAATTTCTGTTGGTATGCGCTTCAGGATGCTTTTCGAGACTGAAGAGTCAAGTGTCCGCAGGTACATGGGTACAATAACCGGCATAAGTGATCTGGATGCTGTTCGGTGGCCGAACTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTGTCATTATGGGAAATTGAGCCTTTAACAACGTTCCCAATGTATCCTTCATTGTTTCCCGTCAGATTGAAGCGTCCATGGCATCCTGGCACCTCATCTTTGCTTGATGGAAGAGATGAAGCAGGAAATGGTCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGTGCTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTAGATCCATCTTTGCTTGGAAATGATCAGAATCAACAATACCAAGCCATGTTGGCAGCTGGATTGCAGAACATGGGTAGTGGATATATCATGAGGCCACAGATGATGAATTTTCAGCAACAGCCTATCCATTATCATCTTCAATCAGGAAACAATAACTCGCCTTTGCAACTTCAGCAGCCACAAGCAGTTCAACACTCTGGGTCTTCTAATATGCTGCAGCCACAACAAGCTCAATTACTTACAGAAAACCTGTCTCAGCACCTTCTTCAGAAACCAAATAACAATCAAGAAGTCCAAGCTCAACAGCAGCAGCATCATACTTATCAAGATACACTTCTGATTCAAAATGATCAACTCCATCAGAGACAACCCTCCAACGTGCCTTCACCGTCGTATTCAAAACCAGATTTTCTGGATTCAAACATGAAGTTCACTGCTTCAGTTCCCCCTGGACAAAACATGCTTAGTTCACTTTGCTCTGAAGGAACTGGCAATCTCTTGAATCTATCGAGTCTATCTAGAGGCGGTCAGTCCTTGTTGACTGAACAGTTACCGCAACAATCATGGACACCAAAGTATGCAGATATGCAGGTCAATGCCTTTGGCAGCACAATGTCACATGCACAATATTCCGGAAAAGATTCTGCAATGGTGACTCCACATTGTGATTCAGATGCCCAAAATCGTACTCTCTCGGGTGTCAATATCGATTCATCTGGCCTTCTACTCCCCACCACTGTCCCGGGTTACACCACTTCATCCGCTGACACTGATGCATCCACAATGCAACTAGGGGAGTCTGGATTCCAGGGCTCTCTATACGCTTGCATGCAAGATTCGTCTTCGTTTTTGCACAATGCGGGGCAAATCGATCCACAAAACCAGAACCCAACATTTGTCAAGGTTTACAAATTGGGTTCGGTTGGGCGCTCACTTGACATCTCGCGATTCAACAGCTATCATGAGCTGTGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACAGCAGCTATCGTGAACTGCGAGAGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAAACGCATGCGCTAGGTTCAGGACAAAGGCTTAGCGACAGTGGTGCGGATTCTCACCATGTTGTTTCTGGACAACCACCATCAATTGGCTCACTTGAATACTGA 2577 0.4594 MKLSTSGLGQQGHEGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPDEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPSRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPVRLKRPWHPGTSSLLDGRDEAGNGLMWMRGGPADQGLNSLNFQGAAGLLPWMQQRLDPSLLGNDQNQQYQAMLAAGLQNMGSGYIMRPQMMNFQQQPIHYHLQSGNNNSPLQLQQPQAVQHSGSSNMLQPQQAQLLTENLSQHLLQKPNNNQEVQAQQQQHHTYQDTLLIQNDQLHQRQPSNVPSPSYSKPDFLDSNMKFTASVPPGQNMLSSLCSEGTGNLLNLSSLSRGGQSLLTEQLPQQSWTPKYADMQVNAFGSTMSHAQYSGKDSAMVTPHCDSDAQNRTLSGVNIDSSGLLLPTTVPGYTTSSADTDASTMQLGESGFQGSLYACMQDSSSFLHNAGQIDPQNQNPTFVKVYKLGSVGRSLDISRFNSYHELWEELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDSSYRELREESFVNNVWYIKILSPEDIQKMGEQAVETHALGSGQRLSDSGADSHHVVSGQPPSIGSLEY 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01447 858 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Car05g01447 858 SMART B3_2 129 231 IPR003340 GO:0003677
Car05g01447 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 842 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car05g01447 858 CDD B3_DNA 128 229 IPR003340 GO:0003677
Car05g01447 858 Pfam Auxin response factor 255 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car05g01447 858 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Car05g01447 858 MobiDBLite consensus disorder prediction 474 503 - -
Car05g01447 858 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Car05g01447 858 Gene3D - 294 366 - -
Car05g01447 858 MobiDBLite consensus disorder prediction 830 858 - -
Car05g01447 858 Gene3D - 722 820 - -
Car05g01447 858 PANTHER AUXIN RESPONSE FACTOR 1 842 - -
Car05g01447 858 MobiDBLite consensus disorder prediction 830 849 - -
Car05g01447 858 Gene3D - 127 230 IPR015300 -
Car05g01447 858 ProSiteProfiles PB1 domain profile. 726 816 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01447 Car-Chr5 58664837 58673941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01447 99 832 B3 DNA Binding Superfamily AT5G37020 66.173 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car05g01447 B3 1.4e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01447 05 58664837 58673941 Car02g01482 02 42015577 42023962 PCT