Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01419 ATGAAGAAAAAAAGCGTAGACGAATTCCCTTTCTGCGTTCACTTAGTATCATGGGAGAAAGAGAACGTTTCAAGCGAAGCATTAGAAGCAGCGAGAATCGCGTGCAACAAGTACATGTCCAAATTCGCTGGGAAAGACGCGTTTCACTTGCGCGTGAGGGTTCACCCTTTCCACGTGCTCAGAATTAACAAGATGCTATCGTGCGCTGGGGCGGATAGGTTACAGACTGGGATGAGAGGCGCGTTTGGGAAACCGCAGGGGACGTGTGCTAGGGTTAGTATTGGTCAGGTGCTTATGTCGGTTAGGTGTAAGAGTGGGAATGGCGTTCATGCTCACGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAGAAAATCATTGTCAGTAGAAAGTGGGGATTTACTAAGTTGAGTCAAGATGAGTACTTGAAGTTGAAATCTGAAAACAGAATTGTGCCGGATGGGGTAAATGCCAAGGTTCTTGGGTGCCATGGACCTTTGGCCAATCGTGAGCCTGGGAGAGCTTTCTTGCCGATGTCTGCTTAG 552 0.4837 MKKKSVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLMSVRCKSGNGVHAHEALRRAKFKFPGRQKIIVSRKWGFTKLSQDEYLKLKSENRIVPDGVNAKVLGCHGPLANREPGRAFLPMSA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01419 183 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Car05g01419 183 Gene3D Ribosomal protein L10e/L16 1 142 IPR036920 GO:0003735|GO:0005840|GO:0006412
Car05g01419 183 SUPERFAMILY Ribosomal protein L16p/L10e 2 136 IPR036920 GO:0003735|GO:0005840|GO:0006412
Car05g01419 183 PANTHER 60S RIBOSOMAL PROTEIN L10 1 180 IPR001197 GO:0003735|GO:0005840|GO:0006412
Car05g01419 183 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 180 - -
Car05g01419 183 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Car05g01419 183 Gene3D - 143 176 - -
Car05g01419 183 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01419 Car-Chr5 58403463 58404641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01419 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 83.060 7.64e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01419 K02866 - gmx:100779884 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01419 05 58403463 58404641 Car05g01419 05 58403463 58404641 ECH