Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01417 ATGTGTCGTTCAAAGCATGAAATTGTTTTCATCATCTTATGCTTCTGCTTCTATTTCATACTTGCTGCCGCGCAAGTTATCAATATCACTGATCCTACTGAAGTGCTAGCATTGAAGAACATACATGAAAGTTTGAATGATCCAAATGGACATTTGAGCAACTGGAACGATGGTGACCCATGTATATCTCGTTGGAGAGGAGTTGTGTGCTCTAATGAAACAATAGAGGAAAATTTTCTACATATTGTAGAATTGGAACTACTGAAATTGAATTTGTCTGGAAATTTGTCACCAAATATTGGCAACTTAGCTTATTTGAAAATATTGAACTTCATGTGGAACAACATAAATGGGACAATTCCAAAGGAAATTGGCAATATCAAATCTTTGGAACTCTTGTTCCTGAGTGGAAATGAATTAACAGGACATGTGCCAGAGCAACTAGGCTTTCTTCCAAAACTAAGAATTTTGCAAATTGATGAAAATAAATTATCAGGAACTATACCTTTATCATTTGCAAATTTGAACAAGACAAAGCACTTTCACATGAACAATAATTCCCTTAGCGGACAAATCCCACCAGAACTTTCCAAATTACCAAGCCTTATTCATCTGCTTCTGGACAACAATAACTTATCAGGACATCTTCCACATGAGCTATCCAATATGCCAAACTTGTCTATACTGCAACTTGACAACAATAACTTTGGTGGAAATAGCATTCCAGATAGTTATGCCAACATGTCAAAATTGGTGAAGTTGAGCCTTAGGAATTGCAACTTGCAAGGACCAATTCCTGATTTAAGCAAGATACCCCACCTCCTTTATATTGACCTCAGCTCCAATCAGTTGAATGAATCAATTCCTCCCAATAAGCTTGCTGCAAATATCACTACCATTATTTTATCAAACAACAATCTTACTGGAACTATTCCATCCTATTTTTCTGGTCTTACACGTCTCCAGAAATTGTCACTTGCAAACAATTTATTGAGTGGTAGTGTTCCTTCCATCATTTGGCTAAACAAGCCTTCAAATGCTTCCGGAAGATTGCTGTTAGAGTTGCAAAATAACCAATTTATAAGCATATCAGGCAGTACTAACCTTCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCCTTATGCTCAGATAACACACTGGATCAATTCTGTAAAGTTGAAGTAGCTAGTAGTGACACAAATGGCACATCTCCAACAAACATCAGCGACCCTTGTCCCACTAAAAAATGTCCACCTCCTTATGAATACTCTGCAAAGTGTTTCTGTGTGGCTCCATTGATTATTGGTTATCGACTGAGAAGTCCTGGTTTTTCATATTTTCCTCAATACTTCGATGCATTTGAGGAATACTTGACTTCTAATCTTAATATTAGTGCCAATGAATTAAGCTATACTTTTGAGTGGCACGTAGGACCTCGATTGCTAATGATCTTGAAGCTTTTTCCTGCATATGTTGATAACAATAGTTCTCATACTTTCAATACAAGTGAGATCCAACGGATTAGAAATATGTTCACGGGATGGATTATTCCTAATCGTGATTTGTTTGGACCTTATGACTTGATGGACTTGGTTCCTTATAATAATGGGACCAACGCCTCTTCAAACTCAGGCTTAAGCACAGGTGCATTGGTGGGCATAATCTTAGGCTCAGTTGCATGTGCACTGTCGTTGTCTGCAATTTTTGTTCTTTTAATATTAAGAATAAGAATGAAACATCGCGATGCAGTTTCCAAACCACGTCATTCATCTAAGATCTCAATGCAAATTGACGGCATAAGAGCCTTTACTTATGGAGAGTTGGCTGCTGCTACAAGCAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGAAAGGTTTATAAAGGTATTCTCTCTAATGGCACTGTGGTTGCCATAAAACGTGCACAGCAGGGATCGCTGCAAGGTGAGAAGGAGTTTCTGACAGAAATATCAGTACTATCAAGGCTACATCACCGTAACCTTGTGTCACTAATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGAGACCACCTTTCTGTTACATCAGAAAAACCTTTGCCTTTTTCTATGAGATTGAAGATAGCACTAGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTCAAGTCTACCAACATATTATTGGACTCTAAGTTCACTGCGAAAGTAGCAGATTTTGGACTTTCGAGGCTTGCCCCAGTTCCAGATGTTCAAGGAATTGTACCTGGTCATGTATCCACAGTGGTAAAGGGGACCCCGGTAAGACCTTCATGA 2373 0.3852 MCRSKHEIVFIILCFCFYFILAAAQVINITDPTEVLALKNIHESLNDPNGHLSNWNDGDPCISRWRGVVCSNETIEENFLHIVELELLKLNLSGNLSPNIGNLAYLKILNFMWNNINGTIPKEIGNIKSLELLFLSGNELTGHVPEQLGFLPKLRILQIDENKLSGTIPLSFANLNKTKHFHMNNNSLSGQIPPELSKLPSLIHLLLDNNNLSGHLPHELSNMPNLSILQLDNNNFGGNSIPDSYANMSKLVKLSLRNCNLQGPIPDLSKIPHLLYIDLSSNQLNESIPPNKLAANITTIILSNNNLTGTIPSYFSGLTRLQKLSLANNLLSGSVPSIIWLNKPSNASGRLLLELQNNQFISISGSTNLPPNVTLLLDGNPLCSDNTLDQFCKVEVASSDTNGTSPTNISDPCPTKKCPPPYEYSAKCFCVAPLIIGYRLRSPGFSYFPQYFDAFEEYLTSNLNISANELSYTFEWHVGPRLLMILKLFPAYVDNNSSHTFNTSEIQRIRNMFTGWIIPNRDLFGPYDLMDLVPYNNGTNASSNSGLSTGALVGIILGSVACALSLSAIFVLLILRIRMKHRDAVSKPRHSSKISMQIDGIRAFTYGELAAATSNFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISVLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLPFSMRLKIALESAKGLMYLHTEADPPIFHRDVKSTNILLDSKFTAKVADFGLSRLAPVPDVQGIVPGHVSTVVKGTPVRPS 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01417 790 SMART serkin_6 616 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01417 790 Gene3D Ribonuclease Inhibitor 296 413 IPR032675 -
Car05g01417 790 Gene3D Ribonuclease Inhibitor 186 295 IPR032675 -
Car05g01417 790 ProSiteProfiles Leucine-rich repeat profile. 86 107 IPR001611 GO:0005515
Car05g01417 790 ProSiteProfiles Protein kinase domain profile. 616 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01417 790 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 786 - -
Car05g01417 790 SUPERFAMILY L domain-like 41 400 - -
Car05g01417 790 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 786 - -
Car05g01417 790 Pfam Leucine rich repeat 296 333 IPR001611 GO:0005515
Car05g01417 790 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Car05g01417 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Car05g01417 790 SUPERFAMILY Protein kinase-like (PK-like) 590 785 IPR011009 -
Car05g01417 790 Gene3D Ribonuclease Inhibitor 32 185 IPR032675 -
Car05g01417 790 Gene3D Phosphorylase Kinase; domain 1 586 691 - -
Car05g01417 790 Pfam Protein tyrosine and serine/threonine kinase 619 764 IPR001245 GO:0004672|GO:0006468
Car05g01417 790 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Car05g01417 790 Gene3D Transferase(Phosphotransferase) domain 1 692 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01417 Car-Chr5 58359868 58371747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01417 11 786 Receptor kinase-like Gene Family AT5G01950 54.119 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Car05g01417 PK_Tyr_Ser-Thr 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01417 - - gmx:100786467 1090.49