Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01413 ATGATCCCACAACAACAATCTGACTTTGATCACAATTATCTCAAACCTTATTACGGAAAGCTGTTTCCTTTTGCTGATATATTTAAATGGATGACTTATGGCCACGATGGGAAACATCCTGGTTGTGATCAATCTTACTTTGGAAGAAGGGAATTTTCCTTCACTCTGAAAGGGGATTTTTATCTGCGGTTCCAATCTTTCAACAATGCCCTTGAGCTCGAAAACTCCATCAAGGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTTTACACAGTCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAATGTCTTTGCTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTCCGATACTGCTGCAGGGGTGCTGATGTTTGCTTGAATTGCTGGCCATTGATGACCATAGCTATCAAAGTGATCGATGCTTCCTTAAGAGATGACTTTGGTTTTAACCACATACTCTGGGTCTATAGTGGACGCAGAGGTGTTCACTGTTGGGTCTGTGATGGGAAGGCTAGAAGGTTGACTAATGAGCAAAGAGCTTCTATAGCTGACTATTATCGAGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACCAATGTTCTCAAGGACTATTTTGAGAAAATACTGCTTACAAGTCAAAACCTACTGGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGACGAATCTATTGCTTCTGAACTTAGGGGAAAATGGCAAGACAGTAGGCGGTCCTCTAGTGCAAAAGAAGATATTAATGTTGTGCGATGGGAACAGTGCAAGCAGTTGCTGCAATCCGGAAAACATAAGGCACAAGGGTTGCGTAGATGTGTTGAAGAAATTGTGTTCTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCAGTGTGATGATTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTTTAGAAGAGCTTAATAATGAAGGCTCGAGAGCTGATGTTAATGGTGAATGGAATGGAACTTCGCTTGGAAATGCCATTGCGCTTTTCAGAACATCATTCTTAGAACCCTTACAAAAAGCCTGCAAGGAGGAGATAGAACGATCCTATAATTTGAAGTTGCAGCAGTCAAAGAATTCCGTAGGTTGGTAG 1302 0.4101 MIPQQQSDFDHNYLKPYYGKLFPFADIFKWMTYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSFNNALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQGDNNVFAPVERELIFDIDMTDYDDVRYCCRGADVCLNCWPLMTIAIKVIDASLRDDFGFNHILWVYSGRRGVHCWVCDGKARRLTNEQRASIADYYRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKILLTSQNLLATEERYEKILSMIPDESIASELRGKWQDSRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNQCDDFDPTTVPTLFQLLEELNNEGSRADVNGEWNGTSLGNAIALFRTSFLEPLQKACKEEIERSYNLKLQQSKNSVGW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01413 433 SUPERFAMILY Prim-pol domain 10 377 - -
Car05g01413 433 CDD AE_Prim_S 23 362 IPR014052 GO:0003896|GO:0006269
Car05g01413 433 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 15 370 IPR014052 GO:0003896|GO:0006269
Car05g01413 433 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Car05g01413 433 Gene3D DNA primase, PRIM domain 2 414 - -
Car05g01413 433 PANTHER DNA PRIMASE 20 433 - -
Car05g01413 433 PANTHER DNA PRIMASE SMALL SUBUNIT 20 433 IPR014052 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01413 Car-Chr5 58242150 58248201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01413 3 433 Core DNA Replication Machinery Family AT5G41880 66.204 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01413 K02684 - gmx:100780574 795.808