Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01408 ATGTCCGTACAATCAACCTTGAAGCTTCAAAATCTGAAGCAAAAAACACCAAGTTCAAATTTTGAAACCAACCCATCATGCAAAACCGCCACCAAAACAAAAAACAAGCTCCTCCGGATCATTCTCACCGACCACGACGCCACCGATTCCGACTCCTCCGGCGACGATGAAACCCCAAAAAACACACCAAAGCTTAGAAAACCTAAAAAGAAAATCACCCATATCAACATGCACTTTCCTTATGTCTTTGATTCTTCAACAACTTCACCTTCTTCTTCCTCTTGCTCCACTGACCCGACCCGTTTCAAAAGACCCGGAAAATTACCCGCCGGTTCTAACGTTGCTCGCCGCCGCAGCGTGTTTCGAGGCGTTCGTCAGAGGCCTTGGGGTCGGTGGACAGCTGAGATCCGTGATCCGAACCGTAGAAAACGGGTTTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCATCTGTGTACGACGATGCCGCCGTGAAACTTAAGGGCTCAAAAGCTGTCGTCAACTTTCCAAACCGTGCCTCCGCAAAGAGTACTTGTAACGAGCCGTCGAAAGTTTTCTCCGGCGACGGTTTTGCTTCTCCGACGTCTGTTCTGCCTTTCTACGACGGTGACTCGACGCCGTTCGACGGTTTTCGTTACGGTGCTGTGGATGCGTTTGGGTTTGATATCGACGTGCCGTTAAGTTTGACGGACGTTAACTTTGTACTAACGAGTCATCGATTTGGGAAAGAAAAAGAAGACTTCAGTGAATTTGACTTGGATGAGTTCATGACGTGGCCAAGTTAA 807 0.4907 MSVQSTLKLQNLKQKTPSSNFETNPSCKTATKTKNKLLRIILTDHDATDSDSSGDDETPKNTPKLRKPKKKITHINMHFPYVFDSSTTSPSSSSCSTDPTRFKRPGKLPAGSNVARRRSVFRGVRQRPWGRWTAEIRDPNRRKRVWLGTFDTAEEAASVYDDAAVKLKGSKAVVNFPNRASAKSTCNEPSKVFSGDGFASPTSVLPFYDGDSTPFDGFRYGAVDAFGFDIDVPLSLTDVNFVLTSHRFGKEKEDFSEFDLDEFMTWPS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01408 268 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Car05g01408 268 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Car05g01408 268 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 26 264 - -
Car05g01408 268 MobiDBLite consensus disorder prediction 83 113 - -
Car05g01408 268 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Car05g01408 268 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Car05g01408 268 MobiDBLite consensus disorder prediction 1 28 - -
Car05g01408 268 MobiDBLite consensus disorder prediction 44 63 - -
Car05g01408 268 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Car05g01408 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 264 - -
Car05g01408 268 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Car05g01408 268 MobiDBLite consensus disorder prediction 44 71 - -
Car05g01408 268 MobiDBLite consensus disorder prediction 83 100 - -
Car05g01408 268 PIRSF PTI6 7 268 IPR017392 GO:0003700
Car05g01408 268 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Car05g01408 268 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01408 Car-Chr5 58199845 58201469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01408 28 207 AP2-EREBP Transcription Factor Family AT4G27950 40.625 4.08e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car05g01408 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01408 K13434 - gmx:102660028 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01408 05 58199845 58201469 Car05g01408 05 58199845 58201469 ECH
Car05g01408 05 58199845 58201469 Car02g01457 02 41692121 41693930 PCT