Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01404 ATGTCGTATGTGCCTCCACACTTGAGAAACGCAACCTCAACCACGGTGGCTACCACCACTAGACCTTCATCATCTTCAACCCTAGACAACCACCATCACAACACCAACCTCGCATTTTCATCATCACACTCTCATTCTCACTCCAACAACAACACTCCCTCTTTTTCCAATGCCTCTCGCCGTACCTCCGCCGCTCCTCCCTCTTCTCGCATTCTCGCCGTCCCTGACACCGTCTTCCCTAAGTGGCAACCTTCTGAACGCGTTTCTCGCATGAACCCTGACCAGATTGAAGAGGTTCGCATACGGCTTAATCTTGACGTTACTGTTTCGTCTGACTCTCCTGCTGCACCAGCAGCTATAGAATCGTTTAACGATATGTGTTTGCATCCAAGTATCATGAAGGATATTGCGTATCATGAATACACCAGGCCGACTTCTATCCAGTCACAGGCCATGCCTATTGCTCTCACTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGCGGAAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCTCAAACTCCAATTCGGCGCGGAGATGGTCCCCTGGCATTAGTATTAGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTTGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTCGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTATCTAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATCGAAGCATTATCAAAGGAGTACTTAGCTAACCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCCACGACTAATGTTTCACAAACTCTTGTAAAGGTTTCAGAAAGTGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAGGAGGCATCACAAGCTGAAAAGGCTGGTCATCCATTTCCGTTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCGTTGGTTGCTCAAGGATTATCTGCTGTTTCCCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCGTTGCATGATTTTCGGAGTAGCTCCACCAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGATTGGATGTCACAGGAGTGTCACATGTCATCAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACAGGACGTGCGGGGTCAACTGGCATAGCCACTTCATTTTACACTGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAATGCTGTAGCATTCGCTACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACATAAAGAAGCAAATATTGCTTTATCTAGACACCTTGGATCAGGAGCTGCTTCAATTAACATTGAGGATAAGTATAGATTTATGATTACTGCCTCGAACATTAAAAGAGAGGGTGCAGCAGATAGTGCATGGGATGATTGA 1701 0.4533 MSYVPPHLRNATSTTVATTTRPSSSSTLDNHHHNTNLAFSSSHSHSHSNNNTPSFSNASRRTSAAPPSSRILAVPDTVFPKWQPSERVSRMNPDQIEEVRIRLNLDVTVSSDSPAAPAAIESFNDMCLHPSIMKDIAYHEYTRPTSIQSQAMPIALTGRDLLGCAETGSGKTAAFTIPMIQHCLAQTPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLDLLVEEASQAEKAGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSRHLGSGAASINIEDKYRFMITASNIKREGAADSAWDD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01404 566 Pfam Helicase conserved C-terminal domain 352 469 IPR001650 -
Car05g01404 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 328 IPR014001 -
Car05g01404 566 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 22 531 - -
Car05g01404 566 SMART ultradead3 140 343 IPR014001 -
Car05g01404 566 Pfam DEAD/DEAH box helicase 145 315 IPR011545 GO:0003676|GO:0005524
Car05g01404 566 CDD SF2_C_DEAD 340 478 - -
Car05g01404 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 489 IPR027417 -
Car05g01404 566 Coils Coil 207 227 - -
Car05g01404 566 MobiDBLite consensus disorder prediction 1 70 - -
Car05g01404 566 CDD DEADc 132 329 - -
Car05g01404 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 510 IPR001650 -
Car05g01404 566 Gene3D - 81 332 IPR027417 -
Car05g01404 566 Gene3D - 334 527 IPR027417 -
Car05g01404 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 274 282 IPR000629 -
Car05g01404 566 SMART helicmild6 388 469 IPR001650 -
Car05g01404 566 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 531 - -
Car05g01404 566 MobiDBLite consensus disorder prediction 1 66 - -
Car05g01404 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01404 Car-Chr5 58142469 58151621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01404 121 491 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 4.49e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01404 K12823 - gmx:100818387 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01404 05 58142469 58151621 Car05g01404 05 58142469 58151621 ECH