Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01399 atgggttctgACATTGGCATCGTAAATGGTTCGTGTGTTCATGAATGGAAGAAGGGTTGGCCTCTACGATCTGGTGGATTCGTTCAACTTTGCTTCAAGTGCGGATTTATGGAGGAATGGAAGTGTGACATCATGGACTCATTATCTGCCTTTGAGAATACAGTTTTCTGTAATAAATTCCATCGCCAACAAACCGGTTGGCGTGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGTGTAGTATCCAGATCTTTGTTCGAGTATCTCGACTTTGGCGGTATAGGTTGTGTTAGCTGTGTAAATAGTCCCCAACTTAATATGATGAGGAACACCGAAAATCCTAACTGGTCTGTTTCATTGACCCAAAATAATGCAAGGGATATGCATTCTGCTCATTTTGATGGCAGAATGTTTGTCGGTAACAATGTTGATGAAGGAAAACTCATGCAACTATGCAGAGTTGTTGAAGCTAGTGAATCCATCCGCTCAAATCATCCTCCGAGAGATGGTGTGATTTCATGTAACGGGAAAAACAATCAAGAAGTTAAGCATTCATTCAGGGAAGGGGATGCTGGATTTTCAAATACGATGAAACCATCTGTTCAGTCATTAACTTTTGCTACATTAGAAAATAATCTACCAACATGGGAGATTAAAAACATGCATGAATCAAACGTGAAGCCGTCTTTGAATATGTGTTTGGGAAATCCATCGGGGAGCAACTTTTTCCCACCTTCTACTGGAGAGAATATAGAAGGAAGACTTGAGGGAAAAATAACTCCTCCCTTTCATCAAGGGCCGAGATCTCGCCCTATATTGCCTAAATTGTTGAAGACTGGTCTTACCATGAATGTCGAAACTGAAAAAGGGATGGTTTCTCAATCACGTATTGCTCGGCCTCCTGCTGACGGGAGGGGCAAGAGTCAATTACTTCCTAGATACTGGCCTAGGATTACTGATCAGGAGCTCGAGCGATTGTCTGGAGATTTGAAGTCCACTGTAGTGCCATTGTTTGAGAAAGTGTTAAGTGCCAGTGATGCAGGTCGGATTGGTCGGCTAGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCCTATTTCACATTCTGAAGGTCTTCCTTTGCGTGTCCAAGACGTGAAGGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGTCCATGGATTTACGCGCTGGTGATACTGTCACATTTAGTCGGATAGATCCTGGGGAAAAACTTGTTATGGGTTTCAGAAAGGCAACAAATTCTATAGATGCACAGGATGCTTCTACATCTGCACATTCTAATGGCATTTCAGCCAAGGGAGCCACCTTTTCTGGTGGACCTGAGAATCTTCCGTCCGAAAGTAATTGTGCCGATCTACTCCGTCCAACAAAAGGGAACGGTGAACTTCACTTAAATGGACATCCAGAACCTATGCATTTGGGTACCGGAGCTGCTAGTTTGCTTAAAACTGAAAATGGCGACATGACAAACAATAACTCACTGGATCAAAAAATTTCGGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGATCATTGGCAATGATGATGCTATGGAGTTGACACTTACATGGGAAGAAGCGCAGGACTTGCTTCGTCCGCCACCTAGTGTCAAGCCAAGTATTGTCATGATTGAGGATCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGGCAGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGAGGAAGTTGCCAGTTGATGTTCTTCTTCCTCCCAAGTGGTCATGTTCTGAAAATGTTTGGGATACAAGCAGATCTTCATGTTCTGCACCAGATGAGCTGAGCCCAAGAGAATTAGAAAATCTTTTGAAAACCAGCAAAGATTTTAAGAAGCGGCGAATTGTAGAAAACAGCAAGTTGATCCAAGAACATGAGCCTTCTGGCTTAGATGCTCTTGCCAGCGTAGCAGTTTTAGGGGAAAATCTCATCGATCCTGCTGATTCCTCAGCTGGAGCCACCACTAAACATCCCAGACACCGTCCTGGCTGCTCTTGTATCGTGTGCATTCAGCCCCCAAGTGGAAAAGGGAGACACAAGCCAACATGTACATGCAATGTGTGCACGACGGTGAAGCGTCGGTTCAAAACCCTAATGCTACGTAAGAAGAAACGCCAATCGGAACGTGAAGCAGATGCTGCCGCCAAGAAAGATCTCATTCGCAAAAGAGACGAGTCAGATACCAACGGAGCATCGAGACATAAAGCAAAAAGTTCTTTTGAAAAAGAGGGAGGACTAAATAGAGGCAAAGCCGAGGTTGGCGAGTCAAGTGCTGGACAGATAGACCTGAATTGTCATCCCAATCGCGAAGACTCGCAAGTGGATAATAACGCGAAACTTAGCATGTCCAGTCATCATCTTGAAAATATGAACCAAAATGGTGGTCTCACTCAATCTAATGGTGAAAGTAAGAGAAACTTATCTGATGAAAGATGCATTGCATCCATTGTCTGGAACAAAGAAAGAAGAGATGAAGTATACAAAAACTCAAATGAAAGTCAAAACAATATGTCTTAG 2688 0.4301 MGSDIGIVNGSCVHEWKKGWPLRSGGFVQLCFKCGFMEEWKCDIMDSLSAFENTVFCNKFHRQQTGWRECNFCNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNSPQLNMMRNTENPNWSVSLTQNNARDMHSAHFDGRMFVGNNVDEGKLMQLCRVVEASESIRSNHPPRDGVISCNGKNNQEVKHSFREGDAGFSNTMKPSVQSLTFATLENNLPTWEIKNMHESNVKPSLNMCLGNPSGSNFFPPSTGENIEGRLEGKITPPFHQGPRSRPILPKLLKTGLTMNVETEKGMVSQSRIARPPADGRGKSQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMDLRAGDTVTFSRIDPGEKLVMGFRKATNSIDAQDASTSAHSNGISAKGATFSGGPENLPSESNCADLLRPTKGNGELHLNGHPEPMHLGTGAASLLKTENGDMTNNNSLDQKISALEKKRTRNIGLKSKRLIIGNDDAMELTLTWEEAQDLLRPPPSVKPSIVMIEDQVFEEYDEPPVFGKRTIFSGSSSGGKEQWAQCDDCSKWRKLPVDVLLPPKWSCSENVWDTSRSSCSAPDELSPRELENLLKTSKDFKKRRIVENSKLIQEHEPSGLDALASVAVLGENLIDPADSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKDLIRKRDESDTNGASRHKAKSSFEKEGGLNRGKAEVGESSAGQIDLNCHPNREDSQVDNNAKLSMSSHHLENMNQNGGLTQSNGESKRNLSDERCIASIVWNKERRDEVYKNSNESQNNMS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01399 895 CDD B3_DNA 338 439 IPR003340 GO:0003677
Car05g01399 895 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 7 857 - -
Car05g01399 895 ProSiteProfiles Zinc finger CW-type profile. 604 654 IPR011124 GO:0008270
Car05g01399 895 MobiDBLite consensus disorder prediction 756 831 - -
Car05g01399 895 SMART B3_2 340 440 IPR003340 GO:0003677
Car05g01399 895 MobiDBLite consensus disorder prediction 760 806 - -
Car05g01399 895 MobiDBLite consensus disorder prediction 845 860 - -
Car05g01399 895 Gene3D - 600 653 - -
Car05g01399 895 ProSiteProfiles B3 DNA-binding domain profile. 340 440 IPR003340 GO:0003677
Car05g01399 895 MobiDBLite consensus disorder prediction 448 478 - -
Car05g01399 895 MobiDBLite consensus disorder prediction 485 504 - -
Car05g01399 895 MobiDBLite consensus disorder prediction 845 865 - -
Car05g01399 895 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 857 - -
Car05g01399 895 SUPERFAMILY DNA-binding pseudobarrel domain 338 442 IPR015300 -
Car05g01399 895 Pfam CW-type Zinc Finger 609 651 IPR011124 GO:0008270
Car05g01399 895 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677
Car05g01399 895 MobiDBLite consensus disorder prediction 291 311 - -
Car05g01399 895 Gene3D - 318 445 IPR015300 -
Car05g01399 895 MobiDBLite consensus disorder prediction 448 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01399 Car-Chr5 58065837 58072786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01399 1 831 B3 DNA Binding Superfamily AT2G30470 47.738 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car05g01399 B3 5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01399 05 58065837 58072786 Car05g01399 05 58065837 58072786 ECH
Car05g01399 05 58065837 58072786 Car02g01447 02 41372652 41378186 PCT