Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01389 ATGGACAAAGACATATCAAATTGGGTAATGGAATTCCTCCTTCGAAGCTCCGTACCCGATTCACTCATCCAAAAAACCCTAACCGTTCTTCCAGTCTCCGCCGCCGATTCACGCCTCAAGAAAACCCTCCTCCTCCGCATTCTCCAAACTCAACACCTCAAAGCCTCCCTCTCCGAAATGTCTCTCCATATCCTTGAACAACTCGAGGAGCTTCACTGCAACGACGCCGTTCCTGTTCCCGATGCAATGCGTAGCGCTTATTGCGCCGTTGCCGTTGATTCCACCGTTAAATATCTCATCTCATCTCCTGAAGATCCTTCCGGCGAGTATTTTTCCGCTGTTCGTCGGATATGGCGTGGCCGTGTGGTGAAATTGTCGGCGTTGGAACGTCGGAGTGGGATTTTTTCCGATGAGTTGATACAGTGGGCGGAAGATATTGAAGCTGCGCTTTGGGATGTTAGGGTTTCGGAGAGGCTTGTGGGTTTGAACACAAGGAGAGATGCGATGAATGAAGTGAAACGGTATTTGAAGGAAGCTTGGGGATTGATGGGACCTTCGTTTCTCGATTCGATGGCGTCCTTTTCTAAGGCAAAAGATTCGCGCCCTGAAGGTGTTTGTGAAATTGCTTCGGGTGGTGAAATGCTGAGGAAGCGTGATGATTTGGGAAAGGAGAAAATGTACTatgttggtgacggtgatgataagaatgataatgataatgttgttgatgatagtgacgatgatgTGGCTGAGGTGAGTGAAAATCTTGGCGATGAGCAATTGGAAGAGAGAGTTGGTACTTCTGTAGACCCAAATCAAGAAGTGGGTGGGTGTGATTCTTTAAAGGGAGATAAAGAAATTCGGAAAGGAAATCTTCAGCCTAAGCGCAAGTACTCTTCACTTCGAACATGCCACAGGGGAGTTAAAATCTCTGGTGCTGAGGAAGTGAGGCCAACAAATTTGTTGTGTAAATATGATAGCTTACCTAGTGCTGAAGTTAAGAAAGTTCGGGAATCCCTTAAATCAAGTTCTATGGAGTTAAAAGCATTGGTCAAGGATCCTCTTCCTGATGCGTTGCATACATCTGAACTTGTAAGATCCAAATTGGCAACAAAAGATATAAATCTTGGGCCACCCATTGAAAACCAGAGTCAACGTGTAGATGTACCAGATTCAAATGCATGTAAGATTGTTGTACTTTATCAGCCTAAAGATGCCAAACTTGAAAAGAAGTCTGTTGCTCATTGTAGTAATAGCCATCGCCCCAACTTAATGGAACAGGCAAGTTCTGCTCGTGCTTCCGAGTGGAATGATTCAATAGAGAACTTACCGCATGAAAGTCAACCAAGAAGGAAGAAAAGGAGATGGACTTCGTTGGAAGAAGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGAGGACAATCAGAGACTTTTACAGTAACATATTTGAATATAGAAGTGGAGTTGATCTGAAGGACAAGTGGCGAAATATGCTGCGGTGA 1515 0.431 MDKDISNWVMEFLLRSSVPDSLIQKTLTVLPVSAADSRLKKTLLLRILQTQHLKASLSEMSLHILEQLEELHCNDAVPVPDAMRSAYCAVAVDSTVKYLISSPEDPSGEYFSAVRRIWRGRVVKLSALERRSGIFSDELIQWAEDIEAALWDVRVSERLVGLNTRRDAMNEVKRYLKEAWGLMGPSFLDSMASFSKAKDSRPEGVCEIASGGEMLRKRDDLGKEKMYYVGDGDDKNDNDNVVDDSDDDVAEVSENLGDEQLEERVGTSVDPNQEVGGCDSLKGDKEIRKGNLQPKRKYSSLRTCHRGVKISGAEEVRPTNLLCKYDSLPSAEVKKVRESLKSSSMELKALVKDPLPDALHTSELVRSKLATKDINLGPPIENQSQRVDVPDSNACKIVVLYQPKDAKLEKKSVAHCSNSHRPNLMEQASSARASEWNDSIENLPHESQPRRKKRRWTSLEEETLRAGVKMFGEGNWRTIRDFYSNIFEYRSGVDLKDKWRNMLR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01389 504 SMART sant 452 504 IPR001005 -
Car05g01389 504 CDD SANT_TRF 454 504 - -
Car05g01389 504 Gene3D - 445 504 - -
Car05g01389 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 448 504 IPR017930 -
Car05g01389 504 PANTHER MYB TRANSCRIPTION FACTOR 1 504 - -
Car05g01389 504 ProSiteProfiles Myb-like domain profile. 448 503 IPR001005 -
Car05g01389 504 Pfam Myb-like DNA-binding domain 453 503 IPR001005 -
Car05g01389 504 PANTHER MYB TRANSCRIPTION FACTOR 1 504 - -
Car05g01389 504 SUPERFAMILY Homeodomain-like 449 504 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01389 Car-Chr5 57957687 57964491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01389 456 503 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 6.56e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g01389 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01389 - K11111 aprc:113849788 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01389 05 57957687 57964491 Car05g01389 05 57957687 57964491 ECH