Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01385 ATGACTAGAAAAAAGGTGAAACTTGCCTTCATTGTCAATGATGCAGCTAGAAAAGCCACATACAAGAAAAGGAAGAAGGGTTTATTGAAGAAAGTTGATGAACTAAGCACCCTTTGTGGCATCGAAGCTTGTGCTATATTGTATGGCCCTTATGATCCTCAACCCGAAATTTGGCCATCGCCATGGGGAGTCGAAAGGGCACTCTCAAAATTTAGGACAATGCCTGAAATGGAGCAAAGCAAAAAAATGATGAACCAAGAGACTTTCATGAGACAAAGGGTTTTGAAGACTAAAGAGCAAGTGAAGAAACAAAGGAAAGAGAATAGGGAGAAAGAGACAACACTTCTCATGTTTCAATGTCTTAATGAAGGAAAAATTGTGCACAACAATATGACAATGGTTGATTTGAATGATCTTTCTTGGTTGATTGACCAAAATTTGAAGAATATTGGTAGAAAGTTGGAAGCAGAGGataacaacaacaataatattaacaataataacaataatGGTCAAATTCAAATCATGGATACTCCAAATCAATTGGTGGAATTGGCACCACTACCATCAAAGAATGAAGAATTGCCACCAATGGGCCATCCCCATGTTGGATTGGGTATGAGTAATGGGGACAACATCATGCAAAGGCAGTGGATCATGGACTTGATGATCAATGGTAATGGTAATGGTAATGGAGATGAGATAAATATTCCCTTTGGTGATGCCAATGTTCAAAGTGGATTTTGGCCTAACCTACTATCTTGA 765 0.3739 MTRKKVKLAFIVNDAARKATYKKRKKGLLKKVDELSTLCGIEACAILYGPYDPQPEIWPSPWGVERALSKFRTMPEMEQSKKMMNQETFMRQRVLKTKEQVKKQRKENREKETTLLMFQCLNEGKIVHNNMTMVDLNDLSWLIDQNLKNIGRKLEAEDNNNNNINNNNNNGQIQIMDTPNQLVELAPLPSKNEELPPMGHPHVGLGMSNGDNIMQRQWIMDLMINGNGNGNGDEINIPFGDANVQSGFWPNLLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01385 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 - -
Car05g01385 254 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car05g01385 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car05g01385 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g01385 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g01385 254 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Car05g01385 254 Coils Coil 94 114 - -
Car05g01385 254 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01385 254 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Car05g01385 254 Coils Coil 147 167 - -
Car05g01385 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Car05g01385 254 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01385 Car-Chr5 57867025 57867789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01385 1 169 Type I MADS-box Gene Family AT5G48670 56.213 2.96e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01385 SRF-TF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01385 - - gmx:100813231 251.521