Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01384 ATGAAGAAGGTTAATGAAATCAGCACCCTTTGTGGAATAGAAGCATGTGCAATAATTTATGATAAAAACAATACTCAAGGAGAGGTTTGGCCTTCAGATTCAGGAGTCAAAAGTGTATTGTCAAGGTTTATGAATCTTCCTGAAATGGAACGAAGTAAAAAGATGATGGATCAAGAGTTCTTCTTGACACAAAGCATAGCAAAAGTCTATGAACAAATGAAGAAACAAAGGGAGGAAACTAGGAAGAAGGAAATGGCCAGTCTCATTAGTCAATATGTTCATACTAGAGAATTTAATGGCTATTTAATGAGCAAGAATGATCTCAAAGATTTGTCGTCTTTAATCGACGAAGGACTAAAGAAAATCGAACAAACGATGACACAAATGAAAATTGAAGGCGAAGAGGAGGTTGTAAATGGAGCTCATACTATGAATGAAGTAGAGGGGCAGAAAAATATGCAAGCTATGAATGAAATTGAGGGGATGGAAAATATTGGCCACACCCAATTAGGGTTTGTTAGTGAGGGAGATGATCATCAAGTAAATATGGGTCATGTTGCTTGTGGACTAGAGACCATCATGGGTGATGATATACAAATTAATTACCAACAATGGCCTATGGATTTCCCCATGCTACCATTTTCATATGATAATATTGACCCAAATGGTTTTTAG 675 0.3644 MKKVNEISTLCGIEACAIIYDKNNTQGEVWPSDSGVKSVLSRFMNLPEMERSKKMMDQEFFLTQSIAKVYEQMKKQREETRKKEMASLISQYVHTREFNGYLMSKNDLKDLSSLIDEGLKKIEQTMTQMKIEGEEEVVNGAHTMNEVEGQKNMQAMNEIEGMENIGHTQLGFVSEGDDHQVNMGHVACGLETIMGDDIQINYQQWPMDFPMLPFSYDNIDPNGF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01384 224 CDD MADS_SRF_like 1 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01384 224 Gene3D - 1 64 IPR036879 GO:0003677|GO:0046983
Car05g01384 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Car05g01384 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Car05g01384 224 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01384 Car-Chr5 57849712 57850386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01384 4 135 Type I MADS-box Gene Family AT5G48670 43.939 1.35e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01384 SRF-TF 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01384 - - cam:101511888 361.688