Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01383 ATGGCTAGAAAGAAGGTGAAACTTGCATACATAATCAATCATTCAAACAGGAAGGCAACATACAAAAAGAGGAAATATGGTTTACTGAAGAAGATTAGTGAACTGAGCATCCTATGTGGGATAGATGCATGTGCAATAATTTATGGTGAAAACAATCCTCGAGCAGAGGTTTGGCCATCTACAATTGGAGCAAGAAGTGTGTTGTCAAAGTTCATGCGTTTGCCAGAATTGGAGAGAAGAAAAAAGATGGTGGATTTGGAGGGATTCTTGACTCAAAGTATAGCGAAAGTCCAAGACTCGTTGAAGAAACAAATGGAAGAAAATCAAAGGAAGCAAATGAGTTATTTTATTAGTCACTTTATTCACACCGGTGAATATAACCCTGGTAATGTGAACTTGAATGATCTCAATGATTTAACGACAATAATTGATAACAATCTAAAGGAAATCGAAGGAAAATTGAGTTCGATGGAAGTCGTAGCCGAAGAGGAGACTGGAAATAGAGTTGAACCTATGCATAATCATGTTGGTGTCCAAGAACGGGAGACCAACATGAATTATGCTATGAAATCTGATGATGAACATCTTCCTTTGGACTTACCATTTGATGATGTTAATATCGACACAAATGGTCTTTGGTCTATCTAG 648 0.3719 MARKKVKLAYIINHSNRKATYKKRKYGLLKKISELSILCGIDACAIIYGENNPRAEVWPSTIGARSVLSKFMRLPELERRKKMVDLEGFLTQSIAKVQDSLKKQMEENQRKQMSYFISHFIHTGEYNPGNVNLNDLNDLTTIIDNNLKEIEGKLSSMEVVAEEETGNRVEPMHNHVGVQERETNMNYAMKSDDEHLPLDLPFDDVNIDTNGLWSI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01383 215 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 173 - -
Car05g01383 215 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Car05g01383 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01383 215 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Car05g01383 215 PANTHER MADS BOX PROTEIN 2 173 - -
Car05g01383 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Car05g01383 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car05g01383 215 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Car05g01383 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g01383 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g01383 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01383 Car-Chr5 57842753 57843952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01383 1 185 Type I MADS-box Gene Family AT5G48670 44.444 1.96e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01383 SRF-TF 8.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01383 - - cam:101511888 413.305