Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01380 ATGGTTAGGAAGAAGGTGAAACTTGCCTACATAGTCAATCATGGGAGCAGGAGGGCAACATTCAGAAAAAGGAAGAATGGTATATTTAAGAAGATAAGTGAACTCACCACCCTTTGCGGGATAGAAGCATGTGCAATAATCTATGGTGAAAACGAACAAGAAGCTGAAGTCTGGCCATCTCCGGCAGGAACTAGAAGTGTGTTAAATAGGTTCATGAGTTTGCCTGAACTCGAACGAAGAAGAAAGATGGTGGATTTGGAGCGTTTCTTGACAAAAAGTATAGAGAAAGCCCAAGAATTGTTGAAGAAACAATGGGAGGAGAATAAGAAGAAGGAAATGTCCATTGTTATTGATCAATTTATTTACACAGGTGAATATAATATTGGTAACATGGTGAGCTTGAAGGATCTCAATGATTTCTCGGCGTTCATAGATTTGAATTTAAGCGAAATCGATCAGAAATTGAATTCGATGGAACCTGAAATCCAAGGGGAGGGTGGAAATGGAGCTGAACCTATGATTGGAATAGAGCAACAGGCTAATGCAGGTGCTGATGTGGGTCCCAGCATGAGTTATAATATGCAAATTGATGATTAA 597 0.397 MVRKKVKLAYIVNHGSRRATFRKRKNGIFKKISELTTLCGIEACAIIYGENEQEAEVWPSPAGTRSVLNRFMSLPELERRRKMVDLERFLTKSIEKAQELLKKQWEENKKKEMSIVIDQFIYTGEYNIGNMVSLKDLNDFSAFIDLNLSEIDQKLNSMEPEIQGEGGNGAEPMIGIEQQANAGADVGPSMSYNMQIDD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01380 198 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Car05g01380 198 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01380 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g01380 198 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
Car05g01380 198 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 170 - -
Car05g01380 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01380 Car-Chr5 57796231 57798308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01380 1 155 Type I MADS-box Gene Family AT5G48670 45.912 1.38e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01380 SRF-TF 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01380 - - cam:101510929 394.43