Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01378 ATGACTAGGAAGAAGGTTAACCTTGCATACATAACCAGTGACTCCAAGAGGAGGGGAACATTCAAGAAAAGGAAAAATGGATTAATCAAGAAGGTTGATGAAATAAGCACCCTTTGTGGAATTGAAGCATGTGCTGTAATATTTAGTCAAAACGATCCTGAACCAGAGGTTTGGCCATCACCATGGGGAGTCCAAAGAGTGTTGTCAAGGTTTCAAAGATTACCCGAATTAGAACAAAGCAAAAAGATGTTGAATCAAGAGAGTTTCTTGAAGCAAAGAATCCAAAAAGCCCAAGAACAATTGAAGAAACAAAGGAATGACAACAAAAGTAAAGAAATGACACAACTCATGTTTCAATGCCTTAATGCTGGCCAAATTTTTGACAATGTAACAATGAATGATCTCAATGATCTCTCATGGTTGATTGATCAGAATTTGAAACAAATCGAAAGGAACATCGAAGGGATTCAAACCGGAGAAGTTGTCCAAAATGTAGGGGAAACTTTGAATGTAGGAGAGCAAGCACATATTCAACATGCTCAAGGGTTGGAGAACAATGTTGATGCAATGCAAAGACAACAATGGCCAATGGACTTCCCCAGCAACAATATTGGTGATCAAGTGTTGTCATTTGAAGATGTTAATAATGTCCCAAATGGTGTTTTATGGCCTTAA 675 0.3793 MTRKKVNLAYITSDSKRRGTFKKRKNGLIKKVDEISTLCGIEACAVIFSQNDPEPEVWPSPWGVQRVLSRFQRLPELEQSKKMLNQESFLKQRIQKAQEQLKKQRNDNKSKEMTQLMFQCLNAGQIFDNVTMNDLNDLSWLIDQNLKQIERNIEGIQTGEVVQNVGETLNVGEQAHIQHAQGLENNVDAMQRQQWPMDFPSNNIGDQVLSFEDVNNVPNGVLWP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01378 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 PANTHER MADS BOX PROTEIN 2 167 - -
Car05g01378 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01378 224 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 167 - -
Car05g01378 224 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Car05g01378 224 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Car05g01378 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car05g01378 224 Coils Coil 80 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01378 Car-Chr5 57756554 57757802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01378 1 175 Type I MADS-box Gene Family AT5G48670 54.857 6.06e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01378 SRF-TF 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01378 - - gmx:100816084 257.684