Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01377 ATGAGAAATAAGGTGAAACTTGCTTTCATGATAAATGATTCTGCAAGAAAGATAACTTACAACAAAAGAAAAAAGAGTCTAATGAAGAAGATAAAAGAACTCACTACCCTTTGTGGAATTGATGCATGTGCTATAGTTTATAGTGACTTTAATTCACAACCAGAGGTTTGGCCTTCCCCATGGGAGATCGAAAGGATTATCACAAAGTTCAAAGCTTATTCAGAATATGAGCAAGGAAAGAAGATGTTGGACCAAGAGAGTTTTTTGATGCAAAGGATTGTGAAGTCCAAAGAGCAATTGACAAAAGTGGAGAAAAACAATTCAGAGATGGAGCAGTCATTGATCTTGTTTCAATGTCTTATTAGAGAAAATTTTATTTACACTTTGAACACAGTTGTTTTGAATGATTTGGCATGTGTAATTAATGAGAAGTTGAAGGGAATTAGTTTAAGGGAGGATGAATTAGACAAAAATGCTTCAACAATTTAG 489 0.3354 MRNKVKLAFMINDSARKITYNKRKKSLMKKIKELTTLCGIDACAIVYSDFNSQPEVWPSPWEIERIITKFKAYSEYEQGKKMLDQESFLMQRIVKSKEQLTKVEKNNSEMEQSLILFQCLIRENFIYTLNTVVLNDLACVINEKLKGISLREDELDKNASTI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01377 162 Coils Coil 93 113 - -
Car05g01377 162 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g01377 162 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 2 159 - -
Car05g01377 162 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 159 - -
Car05g01377 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 Gene3D - 12 95 IPR036879 GO:0003677|GO:0046983
Car05g01377 162 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Car05g01377 162 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01377 Car-Chr5 57752622 57753205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01377 2 161 Type I MADS-box Gene Family AT5G48670 49.375 1.17e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01377 SRF-TF 3.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01377 - - mtr:MTR_3g466830 238.81