Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01375 ATGGCTCAAAAGCTTAGAATGGCACACCAAGAATTTTCCATTGTTCTAAAGGGTCTAATTTTTTTATTTTTTAACATGAATATGCAAAGTGCTATAGCTGATTATGGTGGTTGGGAGGGTGCTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGATATGGTAATTTGTATAGCCAAGGATATGGAACCAACACAGCAGCACTAAGCACTGCTTTATTCAACAATGGTTTAAGTTGTGGATCTTGCTATGAAATGAGATGCAATGATGATCCAAGATGGTGCAAACCTGGCTCTATTATTGTTACTGCCACAAATTTTTGTCCACCAAATCCATCTTTGGCTAATAATAATGGTGGTTGGTGTAACCCTCCTTTGCAACATTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCTGAATATAGGGCTGGAATTGTGCCTGTGTCCTTTAGAAGAGTGCCATGTATGAAAAAAGGAGGAATAAGGTTCACAATCAATGGACACTCTTACTTCAACCTAGTTTTGGTCACTAATGTTGGTGGTGCTGGAGATGTTCATTCAGTTTCCATAAAAGGTTCAAGAACTGGGTGGCAATCCATGTCAAGAAATTGGGGCCAAAATTGGCAAAGCAATTCTTACCTTAATGGTCAACCCCTTTCATTTCAAGTCACCACAAGTGATGGTAGAACTATGACAAGTTACAATGTGGCACCATCCAATTGGCAATTTGGTCAAACATTTCAAGGAGCTCAATTTTAG 783 0.4023 MAQKLRMAHQEFSIVLKGLIFLFFNMNMQSAIADYGGWEGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPSLANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQPLSFQVTTSDGRTMTSYNVAPSNWQFGQTFQGAQF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01375 260 Gene3D - 24 164 IPR036908 -
Car05g01375 260 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Car05g01375 260 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Car05g01375 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Car05g01375 260 SUPERFAMILY Barwin-like endoglucanases 37 186 IPR036908 -
Car05g01375 260 Pfam Lytic transglycolase 73 158 IPR009009 -
Car05g01375 260 SMART dpbb_1 73 158 IPR007112 -
Car05g01375 260 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Car05g01375 260 Gene3D - 167 260 IPR036749 -
Car05g01375 260 PANTHER EXPANSIN 10 260 - -
Car05g01375 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 168 IPR007112 -
Car05g01375 260 PANTHER EXPANSIN-A15 10 260 IPR002963 GO:0009664
Car05g01375 260 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Car05g01375 260 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Car05g01375 260 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Car05g01375 260 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Car05g01375 260 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Car05g01375 260 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Car05g01375 260 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01375 Car-Chr5 57718523 57721144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01375 8 260 Expansin Gene Family AT2G40610 78.346 5.12e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01375 - K20628 gmx:100777044 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01375 05 57718523 57721144 Car05g01375 05 57718523 57721144 ECH
Car05g01375 05 57718523 57721144 Car02g01442 02 41333594 41335702 ECH
Car05g01375 05 57718523 57721144 Car02g01442 02 41333594 41335702 PCT