Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01359 ATGGAGATATCATTGTTGAAAATGCTTATTGACAGAATATCCTCATTTCTGCATTTATCATTTTCTGGAAACATGAACTCAGAACCAGTCTCAAAATATTACCAGACGGCAAAGGAGATACTTAAGTTGTTGAAGCCAATCATTGATGCTTTTACTACTTCTGAGCTAGCCTCTGATGAAGTGCTTAGTAAGATATTTGAAGAACTTGGTCATGCTATTGATGAATTAAAGGAGCATGCTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTATTATGCAAGTTGAACCCTTGATATCTAAGATTCAGACTTCGGGTCTCAAGGTCTTGCAGCAGCTGAAGGCTACAAAGCAATGTCCCCATGATGAATTGAGTTCTGAACATTTGGAGCACTGTGTTCAGAAACTTAAGCTTTTAGGACTTGAAGAAACCTCATCTGTCATTAAGGAAGCTATTATGGAACAACTAGATGGTGCAGGACCCAGTACAGAGACCCTAGAAAAAATTGCTGATAGCCTGGGCCTAAGATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCTCTAGAAAAGTTGAAGGAGAATGCCGAACAGAGTGAAAATACTGCCGAAGCTGAATACATTGATCAAATTATTGCTGTTGTTACCCGTCTGCATGAGCGCCTTGTTATGCTTAAGCAATCCCAGAGTGGCAGTCCAGTTCTAGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCCTCAGGGCAAACCTACGAGCGCGCTTTTATCAAGAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATTAAACAATGTGAAACTGGTTGATCCCACAAAGTCCACAAACTTAAATCAAGCATCTATCCTTCATGGGTATATGGAGTCTAGTACTACCAGGGAATCTCCTGTTTTTCCTCATTCCAGGAGCAATCTTCCATCCTCACCTGAGTCGGCTCGTTCTCGTTCTTTTAGCTCACCAGGTAATAACATAACTTCTTCTGGTGGAATCCAGCGAGAGGGAACATCACCTTTGCACCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGCGTTGTTAATGGGCAATATATGGATGCTGCTAAAACATCCCCCTCAGTTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAATTGGCCAACCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTCAGCCCTGAACAATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCCGATGTAAATTTTCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGGGTCAGATGCTGCTGGTCCTGCTCCCGTGCTTTCAATACAGAGAGAGCCTGAGTTCCTGCCCCGATTAATGGAGAATAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTTCTGCTATTGAATCAAGAGTTGATCTTTCTGCTATTGAGACACAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCTCTGATGTTGATACTCAGAGAGAGGCAACTGCAGAAATCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAACATATTAGTTGACTTACTTAAATCAACTGATACAACGATCCAGGAAAATGCCGTTACAGCACTTCTCAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAACGCTGGTGCAATTGAACCTCTGATTCACGTTCTTGAGACCGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTGTCGGTGATTGAGGAAAACAAGGTTAACATTGGGAGGTCCGGGGCAATTAGTCCACTTGTAGATTTATTAGGGAATGGAACTCCAAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATCTGTCAATATTCCACGAGAACAAGAATCGGATTGTACAAGCTGGTGCCGTGAAGCACCTTGTAGAGTTAATGGACCCAGCGGCTGGCATGGTTGACAAGGCTGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGTCGAGGTTGTCGAGTTGGGTTCTGTGAGAGGAAAGGAAAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAATAGATTCTTAAGCATGGTGCTCCAGCAAGGAGCTGTACCACCGTTAGTAGCTTTAGCACAATCAGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGATGA 2502 0.4345 MEISLLKMLIDRISSFLHLSFSGNMNSEPVSKYYQTAKEILKLLKPIIDAFTTSELASDEVLSKIFEELGHAIDELKEHAENWHLLSSKVYFIMQVEPLISKIQTSGLKVLQQLKATKQCPHDELSSEHLEHCVQKLKLLGLEETSSVIKEAIMEQLDGAGPSTETLEKIADSLGLRSNEEVLIEAVALEKLKENAEQSENTAEAEYIDQIIAVVTRLHERLVMLKQSQSGSPVLVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCELNNVKLVDPTKSTNLNQASILHGYMESSTTRESPVFPHSRSNLPSSPESARSRSFSSPGNNITSSGGIQREGTSPLHPRSTSEGSLSGVVNGQYMDAAKTSPSVLDDRSASSDESSVDSIGQPSMSPSRRESSSAFSPEQSQNHVRAVSDSGAFSDVNFQETQGDDSNASQLSTSPGYSRDTSGELNPGSDAAGPAPVLSIQREPEFLPRLMENRSRSQAIWRRPSERLVPRIISSSAIESRVDLSAIETQVRGLVEGLRSSDVDTQREATAEIRLLAKHNMDNRIAIANCGAINILVDLLKSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKVNIGRSGAISPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEVEVVELGSVRGKENAAAALLHLCLHSNRFLSMVLQQGAVPPLVALAQSGTPRAKEKAQALLNQFRSQRHGNSGRG 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01359 833 MobiDBLite consensus disorder prediction 404 490 - -
Car05g01359 833 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Car05g01359 833 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Car05g01359 833 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Car05g01359 833 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Car05g01359 833 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Car05g01359 833 SMART arm_5 539 583 IPR000225 GO:0005515
Car05g01359 833 SMART arm_5 708 747 IPR000225 GO:0005515
Car05g01359 833 SMART arm_5 626 666 IPR000225 GO:0005515
Car05g01359 833 SMART arm_5 585 625 IPR000225 GO:0005515
Car05g01359 833 SMART arm_5 667 707 IPR000225 GO:0005515
Car05g01359 833 Coils Coil 179 209 - -
Car05g01359 833 Gene3D - 536 828 IPR011989 -
Car05g01359 833 PANTHER U BOX DOMAIN-CONTAINING 8 829 - -
Car05g01359 833 MobiDBLite consensus disorder prediction 333 392 - -
Car05g01359 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Car05g01359 833 SUPERFAMILY RING/U-box 226 313 - -
Car05g01359 833 MobiDBLite consensus disorder prediction 404 501 - -
Car05g01359 833 CDD RING-Ubox_PUB 240 282 IPR045210 -
Car05g01359 833 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 829 - -
Car05g01359 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Car05g01359 833 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Car05g01359 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 310 IPR013083 -
Car05g01359 833 SUPERFAMILY ARM repeat 556 822 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01359 Car-Chr5 57531518 57535916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01359 196 833 U-box Gene Family AT2G23140 61.360 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01359 - - gmx:100811250 1289.63