Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01343 ATGACCTCCTCTTCCTTCTCTGATATCCTTAATTCTCCCACCCACCAAAACCTCGGAGACACCGAAAAGCTTCTTCTTCATCATCATCACGTGTTGTCTGATCAAACAGGGTCAGGTGTCCCCAAGTTCAAATCCATACCTCCCCCATCTCTCCCTCTCTCTCCCACTTCTCTCTTTTCTCCTTCTTCTTACTTTTCTATCCCTCCTGGCTTCTCCCTTTCCGAACTTCTTGACTCTCCTGTTCTCCTTAACTCTTCTCATATTTTTCCATCTCCAACAACTGGTTCATTTGCTAATAATAATCAAGGATTCAATTGGAAAAACAATTATGGGGAAAAACAGCACAATATCAAAGCAGAAGATGCAAATTTCTCCTTCCAAACTAAACCCGAGCTTCAATCTTTAACCGGATGGAGTTACGAGGAAACAAATAAACAAGATGGTTTTTCTTCTATGGTGAAAACAGAAAACTCTTCTTCAATACAGAGTTTTATTCCACCAGAGAATAACCACAAAAGAAATTCACAATCAAATTATAAAAATTACAATCAACAACCACAGCAACAAGTTCAAACACTTAGTAGAAGATCAGATGATGGATATAATTGGAGAAAATATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTACAAATGCACATATCCAAATTGTCCAACAAAGAAAAAAGTTGAGAAGAGGTCTTTAGATGGACAAATTACTGAAATTGTTTATAAAGGTAATCATAATCATCCTAAGCCTCAAGCTAACAAGAGGAATAATAATTCAACATCACTTGCAAATCCTTCTTCAAATCATTTTAGTAGTGAGATACAAATCGATTTGGTTGCTACACCGGATAACTCGTCGATATCGATGGGAGGAGATGATGATTTTGAGCAGAGTTCACATGTATCAGTAGGAGATCATGAAGATGAACCTGATGCAAAAAGATGGAGGATAGAAGGTGAGAATGAGGGGATATCAGGAGGAGTTGGAAACAGAACAGTGAGGGAACCTAGAGTTGTGGTTCAGACAACAAGTGACATTGATATTCTTGATGATGGCTATAGATGGAGGAAATATGGGCAGAAAGTTGTAAAGGGAAATCCAAATCCAAGGTAA 1134 0.3792 MTSSSFSDILNSPTHQNLGDTEKLLLHHHHVLSDQTGSGVPKFKSIPPPSLPLSPTSLFSPSSYFSIPPGFSLSELLDSPVLLNSSHIFPSPTTGSFANNNQGFNWKNNYGEKQHNIKAEDANFSFQTKPELQSLTGWSYEETNKQDGFSSMVKTENSSSIQSFIPPENNHKRNSQSNYKNYNQQPQQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRSLDGQITEIVYKGNHNHPKPQANKRNNNSTSLANPSSNHFSSEIQIDLVATPDNSSISMGGDDDFEQSSHVSVGDHEDEPDAKRWRIEGENEGISGGVGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01343 377 Gene3D WRKY domain 343 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 SUPERFAMILY WRKY DNA-binding domain 196 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 MobiDBLite consensus disorder prediction 147 219 - -
Car05g01343 377 Gene3D WRKY domain 182 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 377 IPR044810 GO:0003700
Car05g01343 377 MobiDBLite consensus disorder prediction 147 197 - -
Car05g01343 377 MobiDBLite consensus disorder prediction 289 337 - -
Car05g01343 377 ProSiteProfiles WRKY domain profile. 198 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 24 377 - -
Car05g01343 377 SUPERFAMILY WRKY DNA-binding domain 348 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 MobiDBLite consensus disorder prediction 305 327 - -
Car05g01343 377 Pfam WRKY DNA -binding domain 357 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 Pfam WRKY DNA -binding domain 198 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 SMART WRKY_cls 197 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 ProSiteProfiles WRKY domain profile. 351 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01343 377 MobiDBLite consensus disorder prediction 248 276 - -
Car05g01343 377 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01343 Car-Chr5 57342714 57346255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01343 3 377 WRKY Transcription Factor Family AT2G38470 43.309 7.02e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car05g01343 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01343 K13424 - gmx:100127421 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01343 05 57342714 57346255 Car05g01343 05 57342714 57346255 ECH
Car05g01343 05 57342714 57346255 Car02g01412 02 40831254 40835113 PCT