Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01322 ATGGGAGGTTCTTCACCTTGTGCTTCCTGCAAATTGTTGAGACGGCGTTGTGCACAAGAATGCATTTTTGCCCCTTATTTTCCTTCTGAAGACCCACGCAAGTTTGCCATTGTTCATAAGGTTTTCGGTGCTAGCAATGTCAGTAAAATGTTGCAGGAGCTACCAATTCATCAAAGATCAGAAGCAGTAAACAGTTTAGTTTACGAAGCAAATGCAAGAGTTAGAGACCCTGTTTATGGATGTGTTGGAGCCATATCATACCTTCAAAATCAAGTTACACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATCCTATGCATTCAGATGCAACAAGACCCAGTTTCTGTTACAAGCTCATTACCCACATATGTTGATCAAGATGACAAATTGATGCTCCTATCTGAAAATAGTAATTGTTATGAGCCTCATCTTCTTCCACAATATCCTAACTTTCcttcttcttcttcctcatcttcCAATGTCTTCCAAGACTATGAGCCTCTTAAGAGAGAATCTTTTTGGACTTAA 534 0.3801 MGGSSPCASCKLLRRRCAQECIFAPYFPSEDPRKFAIVHKVFGASNVSKMLQELPIHQRSEAVNSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQAEILCIQMQQDPVSVTSSLPTYVDQDDKLMLLSENSNCYEPHLLPQYPNFPSSSSSSSNVFQDYEPLKRESFWT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01322 177 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Car05g01322 177 Coils Coil 85 105 - -
Car05g01322 177 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 174 - -
Car05g01322 177 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Car05g01322 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01322 Car-Chr5 57137835 57139846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01322 3 177 AS2 family AT2G30130 64.021 2.13e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car05g01322 LOB 5.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01322 - - gmx:100780073 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01322 05 57137835 57139846 Car05g01322 05 57137835 57139846 ECH