Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01287 ATGTCTTGCTCCGTTGCGGTTTCAAATTCCTCTGTATTCTCTCTCTCCTCTTCTTCCCATTACTACACCAAAAGTTCCATCATTTCTTCTTCCTCAGAACCTCTCACACTTGCGCTTCCAATTCTCAATTCTCCTTCTACCACTTCCTCTTGTTCTTCACACTCTTCTCCGGTTTTGAAGAGGAAGAGACCGACTAAGCTTCATATACCTGTTGTTTCTTCTCTTACTATTGATGTCTTGCCGGTGGTACCGTCTCCGTCGTCGGCGAAGAATGTTGTTGAGGTCGAGGGATGTGGGTTTTCTGTTTATTGCAAGAGAGGAAGTAGGAAGCATATGGAGGATCGTTATTCTGCTTCTGTTGATCTTCATGGAGAACCAAACCAGGCTTTTTTTGGCATATTTGATGGGCATGGAGGTACAAAAGCTTCGGAATTTGCTGCAAATAACTTGGAAAATAATGTGTTGAAAGAAGTGATAAGAAGAGATGAAAGTGATATTGAGGAAGCAGTGAAGCATGGCTACCTCAACACAGATTCAGATTTCTTAAAAGAGGATCTTAATGGTGGCTCTTGCTGTGTAACAGCATTGATCAGAAATGGTAACCTTGTTGTGTCCAATGCCGGAGATTGTCGCGCTGTCATCAGTAGAGCAGGTGTTGCTGAGGCCTTAACATCTGATCACAAACCTTCAAGAAAAGATGAAAAAGACAGGATTGAGACACAGGGTGGATATGTTGATATGTGCCGCGGTGTTTGGAGAATACAAGGATCTCTTGCTGTTTCTAGGAGCATTGGAGATAGACACATGAAACAATGGGTGATAGCTGAACCTGAGACCAATATTATCAAAATTGAACATCATCATGACTTGTTAATCTTAGCTTCAGATGGATTGTGGGAAAAGGTTAGTAATCAGGAAGCAGTAGATATAGCTCGTCCTTTTTGTGTAGAGGGCAATGATAGACAAGGACCCTTTCAGGCATGTAAGAAACTTGTAGATTTATCTGCATCACGAGGCTCTATCGACGATGTTAGTGTTATGATCATCAAATTACATAACTATATTTAA 1068 0.4139 MSCSVAVSNSSVFSLSSSSHYYTKSSIISSSSEPLTLALPILNSPSTTSSCSSHSSPVLKRKRPTKLHIPVVSSLTIDVLPVVPSPSSAKNVVEVEGCGFSVYCKRGSRKHMEDRYSASVDLHGEPNQAFFGIFDGHGGTKASEFAANNLENNVLKEVIRRDESDIEEAVKHGYLNTDSDFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISRAGVAEALTSDHKPSRKDEKDRIETQGGYVDMCRGVWRIQGSLAVSRSIGDRHMKQWVIAEPETNIIKIEHHHDLLILASDGLWEKVSNQEAVDIARPFCVEGNDRQGPFQACKKLVDLSASRGSIDDVSVMIIKLHNYI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01287 355 ProSiteProfiles PPM-type phosphatase domain profile. 99 351 IPR001932 -
Car05g01287 355 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 354 - -
Car05g01287 355 PANTHER PROTEIN PHOSPHATASE 2C 3 354 IPR015655 GO:0004722|GO:0006470
Car05g01287 355 Pfam Protein phosphatase 2C 101 343 IPR001932 -
Car05g01287 355 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Car05g01287 355 Gene3D - 90 355 IPR036457 -
Car05g01287 355 CDD PP2Cc 99 351 IPR001932 -
Car05g01287 355 SUPERFAMILY PP2C-like 98 353 IPR036457 -
Car05g01287 355 SMART PP2C_4 85 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01287 Car-Chr5 56581591 56584193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01287 1 355 PP2C-type Phosphatase Gene Family AT2G30020 57.538 4.08e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01287 K17506 - gmx:100818903 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01287 05 56581591 56584193 Car05g01287 05 56581591 56584193 ECH
Car05g01287 05 56581591 56584193 Car02g01356 02 39796902 39799931 ECH
Car05g01287 05 56581591 56584193 Car02g01356 02 39796902 39799931 PCT