Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01284 ATGTCGATGGAGGGTTTCAACGATTCTGGGAGCGTTAAGAGTAAAACTTTGTTTCCGCATAAAAAGCTTCTAATTAAAGAAAGGGTTGAGGTGAGGAGTTTTGAAGAGGGTTTTTTGGGATCATGGCATCCAGGGACAGTTATCCAATGTGAGAGGCGGAAGCGTCATGTTAGATATGAGAATGTTTTGGATGATGACGGGTTGAATCATCTTGTGGAAGTTGTGACTGTTTCAAGTGCTTTGGATGGTTGTTTTGGTTCTTCGAGTTTTCGCCATAAACGCGGTGTGATTAGGCCACTTCCACCTTTAGTTGATTTTGATAAATGTGATCTTAAATTTGGTCTGTGTGTTGATGTGAGTTATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCGCTGTGATGGAATGGAGGAAAGGAGTGTTTTTTTCCCTGATTTAGGGGATGAAATGAAGGTCAGAGTTCATGAAATACGGATTACTCAGGATTGGGACGAAGTTACGGAGAAGTGGGAGCAACGAGGGAACTGGGTGTTTCTTGAGTTGATTGAGGAGCATGAGCGGGAATCATATATTCCGGTTTCGGTGAAGCAAATCTGGTACGACGTACGACAAAAAAACGAATTTTCCACTATTGGAGATTGGACATTGAATGTGAAGAAGGATTTGTGGAGAGACATGATAATGGAGGTAGTTGGTGACTACATGACTCTTACCATAAAAGAAGTTTACTCAGCATTGGAACTTTCTGAGCTTGTAATGGAATCAGTGGAACTAAAATCCGATGCTGATTTAAATACGACCATATCTGAAAAGAAAAATGTTGAGCAGAAAGAACCTGTTTTTCCTGTTAAGAAGGACTTACCTAAGTTTCAAAATGAAACTACCTGCAATGGGTCCGGTGAAGTAGTTTCGGATGCTATCTGTTTTAAGAAAAATGAACACAGGCGAACTTATTCATGGTCCAATCACTGGGAACGTCTAATAGTGTCTGAAAATGAATACTGTCCTGATGCTGTTAAGCAATATGTACTTAATACTAAGAAGAGGCTATCTACAGCACCTTGGACTAATAAAGTATGGAAACATCTTTCATATCTTGGATGGGAAATCGATTTTCATGTAGGTCAAAATGGTAAACGTTACAGGTACAAGCCTCCCAATGACCAGGGAGAGAAGAAAGTTTACTACTCACTTATTAAACTTTGTAAAGATATGGAAATGGAATCCGTCGTGAACTCTTTTCCATCCAAAAGTGATCATAGTATAATGCATCCTACCGGTGACTGTCATGTTCCACACGTGCCTCGTATACCATCGGAAAAGACTCAGAACCGAGATGTATCTCCTCTAGTTGACTGTCATCTTCCACATGTGCCTTGTAAACCATCTGAAAAGACTCAAAACCAAGGTGTATTTCCTCTAGTTGTGCCGCCTCCTTCCGCTGCAGTGGCAGATGAACAAGTGTATTGTCCTCAAGCCATTTTGGAATACCACAAGCGTGCATCGGAGTCGAACTGGGAGAAAAGAAAATGTATTGCAAAAGTAAAAAAGCATCTGTTAGCAGAAGGATGGGATTTAATTGGTCCACCTCCAGATAATAAAAGAAAAGGAATTGTATACATTTCTCCAAACAAACAGAGATTCGGCTCACTCATTGCAGCATGCAATTTCTGTATTGAAGAAAGTACTCTGAAATCTACAATTTCTGGGGAGCAGCCTTTAAATTCCTCAGCCCTTAATGAGGAAAATGTTGGTCAGGTATCATGTGACGAGTTATACAGTGAAAATCGGAAGCGGAAACAAATGAAGAGGTCAAATGAAAGTTTACTGAAGGGCAAAAGCAATGAATTAACTCAAAGGGTCCTGAGATCAAATAAAAGGGTGCGAACGGTGTCTGCCTCTTGTCTGTCACATCAGAAATCTCTAAATGTTATGTCTTGGTTGATAGACTGCAACGCGGTGTTACCAAGGTCTAAGGTTTTTTATCGAGCAAAGCGCGGCCACCGTGTTATGGCTGTAGGGAGAATAACTTGTGAGGGAATCAAGTGTAACTGTTGTCTGAGAATATACGGTCTTGTTGGCTTCGAGTGTCATGCTATTGGTAGTAGTACCACCAGACCAAGTGCTAGTATCTTTCTGGAAGACGGTAGGTCACTCTTATATTGCCAGACACAAATAATGCAAGATCACAAGTCACGGGAGGCTATGGTAAAACCACTCGGTGGTTTGTGCCAGGGCGATAATGATTATGTTTGTTCGGTTTGCCACTACGGGGGCGAACTTATTTTGTGTGATCGGTGCCCGTCTTCATTTCATAAAACGTGTCTCGGTCTGGAGGATGTCCCCGATGGTGACTGGTTTTGTCCATCATGTTGTTGTGGGATTTGTGATCAAAGCAGAATCAATGGGGTGGGCGAGGATGGACATTTGCTTACATGCATTCAATGCGAACATAAGTATCATGTTGCGTGCCTGAAAAATAGAGAAACAAGTAACTCTAGAAGATATGTGGAAAGCCGGTTCTGCAGAAAAGACTGTGAAAAGATATATGCAGGCCTTCAGAAACTGTTAGGAGAGCCGGTTTCAGTGGGTGCAAACAATCTAACATGGACATTGGTGAAGTTTATCGACTCTCAGAGTTGTGATCTTGATACTAGTAAAAGTGAATTAATGGCAGAAAGTTACAGCAAACTCAATCTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCTGTAAAGGAATCTTCCTCTTCCAGAGATATGATGGAAGATGTTATATTTAGCAGATGGTCGGAACTTAATCGAACGAATTTCCAGGGCTTCTATACCGTGCTTCTGGAGAGAAATGAAGAACTGGTCAGTGTGGCAACTATTAGGGTCTACGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGAGTACAGTATCGGCGACATGGAATGTGTCACATTTTAATGGATGAACTGGAAAAGAAGCTCATGCAACTAGGAGTGGAGCGGCTTGTTTTGCCTGCTGTTCCTAGTGTGGTAGACACATGGACCGGTTCTTTCGGCTTCTCGAAGATGACAAACTTTGATAGATCACAATTTCTGGACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTGTTGACAAAGATTCCGTCTCCAGATTCAGTTTTGCCAATAGAGTTCCAACAAAAACAAGACGCTATCTCTGGAAGCAGTAGCGGTAATTTTGACAAGTCTCCAGTATCTGAAGTTTACCAAGAAGGAGAGATAGACAAAAGAGAAATACTGGATCAACAAATGGCGGACAAAAGAGAAATACTAAATCAACAAATGGCGGACAAAAGAGAAATACTGGATCAACAAATGGTGGAGCAACCAAGTCCTGAGGAGCAACAATATTGTCAGAATGGAACCTCTTCACAGGACTCTTTTGTTAAATGGAATGGCTTGTGCTACTACAGAAGAAGGAAGGTGAAAGTGGTTGATGACTAG 3501 0.4153 MSMEGFNDSGSVKSKTLFPHKKLLIKERVEVRSFEEGFLGSWHPGTVIQCERRKRHVRYENVLDDDGLNHLVEVVTVSSALDGCFGSSSFRHKRGVIRPLPPLVDFDKCDLKFGLCVDVSYQEAWWEGVIFDRCDGMEERSVFFPDLGDEMKVRVHEIRITQDWDEVTEKWEQRGNWVFLELIEEHERESYIPVSVKQIWYDVRQKNEFSTIGDWTLNVKKDLWRDMIMEVVGDYMTLTIKEVYSALELSELVMESVELKSDADLNTTISEKKNVEQKEPVFPVKKDLPKFQNETTCNGSGEVVSDAICFKKNEHRRTYSWSNHWERLIVSENEYCPDAVKQYVLNTKKRLSTAPWTNKVWKHLSYLGWEIDFHVGQNGKRYRYKPPNDQGEKKVYYSLIKLCKDMEMESVVNSFPSKSDHSIMHPTGDCHVPHVPRIPSEKTQNRDVSPLVDCHLPHVPCKPSEKTQNQGVFPLVVPPPSAAVADEQVYCPQAILEYHKRASESNWEKRKCIAKVKKHLLAEGWDLIGPPPDNKRKGIVYISPNKQRFGSLIAACNFCIEESTLKSTISGEQPLNSSALNEENVGQVSCDELYSENRKRKQMKRSNESLLKGKSNELTQRVLRSNKRVRTVSASCLSHQKSLNVMSWLIDCNAVLPRSKVFYRAKRGHRVMAVGRITCEGIKCNCCLRIYGLVGFECHAIGSSTTRPSASIFLEDGRSLLYCQTQIMQDHKSREAMVKPLGGLCQGDNDYVCSVCHYGGELILCDRCPSSFHKTCLGLEDVPDGDWFCPSCCCGICDQSRINGVGEDGHLLTCIQCEHKYHVACLKNRETSNSRRYVESRFCRKDCEKIYAGLQKLLGEPVSVGANNLTWTLVKFIDSQSCDLDTSKSELMAESYSKLNLALSLMHECFEPVKESSSSRDMMEDVIFSRWSELNRTNFQGFYTVLLERNEELVSVATIRVYGDKVAEVPLVGTRVQYRRHGMCHILMDELEKKLMQLGVERLVLPAVPSVVDTWTGSFGFSKMTNFDRSQFLDYTFLDFPGTIMCQKLLTKIPSPDSVLPIEFQQKQDAISGSSSGNFDKSPVSEVYQEGEIDKREILDQQMADKREILNQQMADKREILDQQMVEQPSPEEQQYCQNGTSSQDSFVKWNGLCYYRRRKVKVVDD 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01284 1166 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 889 1050 IPR000182 GO:0016407
Car05g01284 1166 MobiDBLite consensus disorder prediction 1122 1143 - -
Car05g01284 1166 SUPERFAMILY FYVE/PHD zinc finger 734 793 IPR011011 -
Car05g01284 1166 SMART ring_2 794 846 IPR001841 -
Car05g01284 1166 SMART ring_2 753 792 IPR001841 -
Car05g01284 1166 SMART agenet_At_2 109 166 IPR014002 -
Car05g01284 1166 SMART agenet_At_2 21 89 IPR014002 -
Car05g01284 1166 SMART PHD_3 794 848 IPR001965 -
Car05g01284 1166 SMART PHD_3 752 793 IPR001965 -
Car05g01284 1166 Pfam Tify domain binding domain 675 726 IPR032308 -
Car05g01284 1166 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 901 1028 IPR016181 -
Car05g01284 1166 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 1103 - -
Car05g01284 1166 Gene3D - 886 1055 - -
Car05g01284 1166 ProSiteProfiles Zinc finger PHD-type profile. 750 795 IPR019787 -
Car05g01284 1166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 805 IPR013083 -
Car05g01284 1166 PANTHER PHD ZINC FINGER PROTEIN 5 1103 - -
Car05g01284 1166 CDD NAT_SF 945 1005 - -
Car05g01284 1166 MobiDBLite consensus disorder prediction 1127 1143 - -
Car05g01284 1166 Pfam PHD-finger 753 794 IPR019787 -
Car05g01284 1166 Pfam Agenet domain 27 102 IPR008395 -
Car05g01284 1166 Pfam Acetyltransferase (GNAT) family 920 1008 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01284 Car-Chr5 56497817 56503746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01284 32 993 PHD Transcription Factor Family AT5G58610 37.111 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g01284 Acetyltransf_1 0.00032 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01284 - - cam:101498411 2379.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01284 05 56497817 56503746 Car05g01284 05 56497817 56503746 ECH
Car05g01284 05 56497817 56503746 Car02g01348 02 39621795 39628164 PCT