Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01273 ATGTGCAGCGGTTCGAGTCCAAAACCTTCTCCAAGTGGTTTGATTGAGGAGCATGAATATGAAAGACAAGAAGAACTGCACCAAAAGGTTTCTGCTTTGCTTGAGTTTTCAGCTACAGATGATTTAATGGCTTTCAAAGATGCTGTTGAAAAAGATGATCATGGTGTTGATGAGGTAGGTTTATGGTATGGAAGGAAGATTGGCTCAAAGGAGATGAGTTATGAAGAGAGGACACCTCTTATGATTGCTGCCTTGTTCGGAAGCAAGGGTGTATTGTCGTATATTCTTGGAACCGGTCGCGTTCATGTTAACCGAAGATGTGGATCAGATGGGGCTACTGCTCTTCATTGTGCTGTGTTTGGTTGTTCTGCTAATTCCCCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCTGTTGATGCGAATGGGAACCGATCGAGTGACTTGATTGACTCGGTGTCTAATAGTATCTTTGGTTCAAGGAAGAGGATACTCCAAGCCATACTAGAAGGTACAgatgatgtcgatgttgttgatgatgatgattatTTTAAGGAAGAAAAGCAGCAACCAAATGCAGGTACACCTCGAATTGAGAAGAAAGATTATCCTATTGATCTATCCCTTCCTGACATAAAGAATGGGATATATAGTTCAGATGAATTTAGGATGTTTTCATTCAAAGTGAAGACTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGTGAAAACGCGAGGCGCCGTGATCCAAAGAAATATCATTACACCTGTGTACCTTGCCCTGAGTTCCGGAAAGGATCTTGCAGTAAAGGGGATGGTTGTGAATATGCACATGGTATTTTCGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAAGATGAGACTGAATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAACCCGAGGAGCTTCGACCGTTGTACGCTTCTACCGGTTCTGCTTTGCCTTCACCTAGATCAGTGGACCCTTACACACTTAACTCTCCATCTTCTTTGATACAAAGGGCCTCGACACCACCTTTGACTCCATCTGCAGCATCTTCTCCTATGAATGGAACCATGTTGTGGCAGACTCAGCTTCATTCTGCTGCAGTCCCTACCCTTCAAATGCCAAGAAGCAGATTGAAAACTTCATTGAATGTTAGAGATACCGATCTAGACATGGAATTGCTTGAACTTGAAAATCGCCTTATGCGGAAGCTAATGATGGAAGAGATGGCAGCAGGTATTTCAACCCCTTCAAAATGGCAAAACTCCATGCCGAATAGTCCATCTTATCCCGTCTCATTGACCGATCATATGGGGGAATCAAATAGGTTTTCAGGAGTGAATCCTACTAACCTTGAAGACATTTTTGCATCGCATTTTCAATCTCCAAATGGAATGCAGAATGTGAACCAGCAACTATGGGGCTATCCTTCTGACGTCACCACTTCAAATAGGATTGGATCTCCACCATTCATGGCTGATCCATCTATGAATCCAAGATATGCTGCCTTTTCGAAGCGTAGCCAAAGCTTTATCGAGCGCGGCGTGGCGAGCTTTAATTCCGAGCTTCCTTCTGTCACCTCAGTTGCTGCGGAGCCTTCTTCTACCTTCTCCAGTTGGGGATCCTCCAATGGAAAATTAGACTGGTCCATCTGCGGCGATGAACTGAATAAGATGAGGAAGTCTTATTCTTTCGCCTTTCAAAACAGAAATAGTAGTACTTCAACAATGGCTGCAACTGCAGTACCACCAAATGATGGTGAACCAGATGTATCTTGGGTTAATTCACTTGTGAAGGATGCTCCAACAATGGAATATGATCAATGTTGTGTTGAAGATTAG 1896 0.4283 MCSGSSPKPSPSGLIEEHEYERQEELHQKVSALLEFSATDDLMAFKDAVEKDDHGVDEVGLWYGRKIGSKEMSYEERTPLMIAALFGSKGVLSYILGTGRVHVNRRCGSDGATALHCAVFGCSANSPEVIKLLLDASADVSSVDANGNRSSDLIDSVSNSIFGSRKRILQAILEGTDDVDVVDDDDYFKEEKQQPNAGTPRIEKKDYPIDLSLPDIKNGIYSSDEFRMFSFKVKTCSRAYSHDWTECPFVHPGENARRRDPKKYHYTCVPCPEFRKGSCSKGDGCEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPRSVDPYTLNSPSSLIQRASTPPLTPSAASSPMNGTMLWQTQLHSAAVPTLQMPRSRLKTSLNVRDTDLDMELLELENRLMRKLMMEEMAAGISTPSKWQNSMPNSPSYPVSLTDHMGESNRFSGVNPTNLEDIFASHFQSPNGMQNVNQQLWGYPSDVTTSNRIGSPPFMADPSMNPRYAAFSKRSQSFIERGVASFNSELPSVTSVAAEPSSTFSSWGSSNGKLDWSICGDELNKMRKSYSFAFQNRNSSTSTMAATAVPPNDGEPDVSWVNSLVKDAPTMEYDQCCVED 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01273 631 MobiDBLite consensus disorder prediction 350 370 - -
Car05g01273 631 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Car05g01273 631 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Car05g01273 631 Gene3D - 266 328 - -
Car05g01273 631 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Car05g01273 631 SUPERFAMILY Ankyrin repeat 71 183 IPR036770 -
Car05g01273 631 Gene3D - 23 187 IPR036770 -
Car05g01273 631 Pfam Ankyrin repeats (3 copies) 70 142 IPR002110 GO:0005515
Car05g01273 631 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Car05g01273 631 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Car05g01273 631 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 622 - -
Car05g01273 631 PANTHER UNKEMPT FAMILY MEMBER 18 622 IPR045234 -
Car05g01273 631 SMART ANK_2a 75 105 IPR002110 GO:0005515
Car05g01273 631 SMART ANK_2a 110 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01273 Car-Chr5 56314415 56317428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01273 25 619 C2H2 Transcription Factor Family AT5G12850 40.441 3.24e-140 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g01273 Ank_2 1.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01273 - - aprc:113846970 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01273 05 56314415 56317428 Car05g01273 05 56314415 56317428 ECH
Car05g01273 05 56314415 56317428 Car02g01341 02 39505871 39509054 ECH