Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01271 atgacaccatcaactctccttttctccttcgccgtcattttcaccataaccACTGTCAACAGCCTTGGCTCCGCCTCCACCACCGCCATCACCTACGCCACAACCACCATCTGCGGCATAGTCGCCGGTAAACCCCACCAATACATCCAATGCTACCAACCCGGAAAACTCATTCCACCGATCCTTCCCAACGTTTCCTTTCAGTCCATCTCCGGTGGCCGGAACTTCTTCTGCGGACTTCGTTCCGATGGACTCAGTCTTCACTGTTGGAACACAAAGACACCAACTTTGGCTTTCAAATTCAAAAGGGTCTATCACAGTGAAAAAATTCAGTTGAATGATGTAGCTGTTGGTGATGATCACGTTTGTGCTACAGAGTTTCATTCTGGTGCGGTAAGGTGTTGGAGAGGTTATGGTGAAACTCATAAACTTGAGTTTCCTTCTCCGGATGAATCGTTTCGGTTTCGAAGCATTACTTGTGGTTGTGGTTTTTGTTGTGGAATATTGATGGAAAATAACAGAGTTCATTGTTGGGGTGAAAATGGTGTTGAAAATTTGATTCAGAAAAAGTTTGAGAATTTTTCAATGTCAACATTGGTTTCTGGTGTGTCTCATGTTTGTGGTTTAACACTTAATGGTGTTTTGGTTTGTAAAGGTGAAAACAATGATTCTGGTAAGTTAAATGTTCCTTTCAATTCTGGTTCTGTTTTTAAAGGCATTGCTTTAGGAAAAGATTTCACATGTGGAATTAGAACAAAAAATGGATTTGTTTTATGTTGGGGTAGTTTTTTTGGTAATGATGCTATGCAAGGTGTTTCCTTTGAGTCAATTGTTGCTGGTTTGGATTTTGTTTGTGGTTTGAGTACTAATAATTTGTCTCTCATTTGTGGGTATGCTAAGCCTCATTTGCATAGTAATGTTTATGTTCCATTGGGAATGATTCTTCCAAGTCCATGTGTTAAAGATTCTTGTAACTCTTGTGGTGTGTATCCAAATTCTGATTTTCTTTGTTATGGTTTTGGAACTATTTGTTATCAATGTGAACCTGAGTTTCAGTTTCCATTACCTATTCCATTGCTACCACCAATATCATCATCACCTAAGAAAGAGTCTCCTTCAGAAGGAAAAGAGTTGAAAGATTGGAAATTGATGGTTTTTTTTATTGTTGGATCAGTTGGTGCTTTTGCTGGTTTATGTACAATTCTTTATTTTGTTTTGATTGGAGTTAGAAGATTTTTGTTAAAGGCAGAAATTGATAATTCTGTTCAACCTACAAGTAGTGAATCAGATGATGGTTATGTTGATATAGCTCCTATGGTTAATAATAATATTAATTTTATGAATGGAACAACAACAACAACATTAAGATCATTTTCAAGTAAAAGGCTTAGTTCAAGTAGATTAAGGAGTGGTTCATCTTCAAAACAGTTAGACAGAACTGAAAATTTCTCATTTTGGGAGCTAGCTTCAGCTAGTGAAAATTTCTCAATGGTTAATAAGATAGGTGCTGGAAGCTTTGGATGTGTTTACAAAGGGAAACTAGTCGACGGCCGCGAAGTTGCGATTAAACGAGGCGACACAAGCACTAAGAAGAAGAAGTTTCAAGAGAAAGAAAGCGCTTTTGATTCTGAGTTGACATTGTTGTCAAGGCTTCATCACAAGCATTTGGTGAGACTATTTGGTTTTTGTGAAGAGAATGATGAGAGGCTTTTGGTTTATGAGTACATGAGTAATGGTTCACTTTATGATCATTTGCATGATAAGAAAAATGTTGAGAAAAATAGTAGCATTATGAATACATGGAAAATGAGAATCAAAGTTGCATTAGATGCTGCAAGGGGAGTTGAGTACATTCATAACTATGCAGTGCCGCCGATAATACATCGAGATATAAAATCTTCAAATATACTTATCGATTCGAATTGGAATGGTAGAGTTTCGGATTTCGGGTTGTCATTAATTTGGCCGGAAAATGATCAACAAGAATTGATGAATAGTTGTAAAGCTGTTGGAACTGTTGGATATATAGATCCTGAGTACTATGTTATGAATGTGTTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGTTATTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAAAATGAAGGTGAATCAAGTCCTATTGGTGTTGTGGAATATGCAGGACCAAAGATAGCTTGTGGAGAGGTGTGGAATGTGTTGGATCATAGAGTTGGATTACCAGAAGTGAATGAAATTGAAGCTATTGAGATTATGGCTTATATTGCTATGCATTGTGTGAATTTAGAGGGTAAAGAGAGGCCTAATATGAATGATATTGTTGCTAATTTGGAGAGAGCATTGGAATTTCTTGAGGATATGTGTCTTATTGATGAATTTGGTTACTTTCTCCATGACAAATGGTGTCAAAGGAGTTTGACTAATGACAATAGAGGCAAAAGAATTCTACCCATTGCATCTCATAGACAAATGAATGGAGCTAACCATCCACCTCATCAACATCGTCGTAGGCGTAGTTTCAGGTCTCACGAACTTGATGAAGATGTTCAGGAGTCTGATCAAATGTACTATGAGAAAGCTGAGGAGCCGACAGttgaagagcaagtccaacaacgtggatttcctggaagaccattggtcacatttgtgttgatacaatatgaacatcatgtggcttag 2691 0.3538 MTPSTLLFSFAVIFTITTVNSLGSASTTAITYATTTICGIVAGKPHQYIQCYQPGKLIPPILPNVSFQSISGGRNFFCGLRSDGLSLHCWNTKTPTLAFKFKRVYHSEKIQLNDVAVGDDHVCATEFHSGAVRCWRGYGETHKLEFPSPDESFRFRSITCGCGFCCGILMENNRVHCWGENGVENLIQKKFENFSMSTLVSGVSHVCGLTLNGVLVCKGENNDSGKLNVPFNSGSVFKGIALGKDFTCGIRTKNGFVLCWGSFFGNDAMQGVSFESIVAGLDFVCGLSTNNLSLICGYAKPHLHSNVYVPLGMILPSPCVKDSCNSCGVYPNSDFLCYGFGTICYQCEPEFQFPLPIPLLPPISSSPKKESPSEGKELKDWKLMVFFIVGSVGAFAGLCTILYFVLIGVRRFLLKAEIDNSVQPTSSESDDGYVDIAPMVNNNINFMNGTTTTTLRSFSSKRLSSSRLRSGSSSKQLDRTENFSFWELASASENFSMVNKIGAGSFGCVYKGKLVDGREVAIKRGDTSTKKKKFQEKESAFDSELTLLSRLHHKHLVRLFGFCEENDERLLVYEYMSNGSLYDHLHDKKNVEKNSSIMNTWKMRIKVALDAARGVEYIHNYAVPPIIHRDIKSSNILIDSNWNGRVSDFGLSLIWPENDQQELMNSCKAVGTVGYIDPEYYVMNVLTTKSDVYGLGVVLLELLTGKKAVFKNEGESSPIGVVEYAGPKIACGEVWNVLDHRVGLPEVNEIEAIEIMAYIAMHCVNLEGKERPNMNDIVANLERALEFLEDMCLIDEFGYFLHDKWCQRSLTNDNRGKRILPIASHRQMNGANHPPHQHRRRRSFRSHELDEDVQESDQMYYEKAEEPTVEEQVQQRGFPGRPLVTFVLIQYEHHVA 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01271 896 ProSiteProfiles Protein kinase domain profile. 495 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01271 896 SUPERFAMILY RCC1/BLIP-II 55 297 IPR009091 -
Car05g01271 896 SUPERFAMILY Protein kinase-like (PK-like) 472 781 IPR011009 -
Car05g01271 896 MobiDBLite consensus disorder prediction 827 856 - -
Car05g01271 896 Gene3D Transferase(Phosphotransferase) domain 1 576 792 - -
Car05g01271 896 Pfam Protein kinase domain 497 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01271 896 Gene3D Phosphorylase Kinase; domain 1 467 575 - -
Car05g01271 896 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 792 - -
Car05g01271 896 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Car05g01271 896 Gene3D - 59 307 IPR009091 -
Car05g01271 896 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 792 IPR044815 GO:0004674
Car05g01271 896 SMART serkin_6 495 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01271 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01271 Car-Chr5 56264863 56269527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01271 5 790 Receptor kinase-like Gene Family AT3G55950 50.185 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Car05g01271 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01271 - - gmx:100776682 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01271 05 56264863 56269527 Car05g01271 05 56264863 56269527 ECH