Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01269 ATGGCTAAAACGACGTCGTTGCTTCTCTCTGCACTGTTCCTCTTTGGAACTCTAGCTCTTATCCAGGCAAAGAAGTCGAAGGAGGATTTGAAGGAAGTGACTCACAAGGTTTACTTTGATGTTGAGATTGATGGAAAGGCTGCAGGTCGTGTTGTAATAGGTCTTTATGGCAAGACAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGGACCGGTAAAAATGGAAAGCCTCTTCATTACAAAGGCAGCTCATTCCACAGGATTATCCCTAGCTTTATGATCCAAGGAGGTGACTTTACACACGGCAATGGAATGGGCGGAGAATCAATTTACGGAGAGAAGTTTGCAGATGAGAACTTCAAGTTAAAGCATACTGGACCCGGACTTTTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTAACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTACTTTCTGGAATGGACGTTGTTTACAAGATTGAAGCTGAAGGAAATCAAAGTGGAACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTACCTCTATAA 615 0.4309 MAKTTSLLLSALFLFGTLALIQAKKSKEDLKEVTHKVYFDVEIDGKAAGRVVIGLYGKTVPKTAENFRALCTGEKGTGKNGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIADSGELPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01269 204 CDD cyclophilin_ABH_like 35 200 - -
Car05g01269 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Car05g01269 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 204 - -
Car05g01269 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 12 204 - -
Car05g01269 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
Car05g01269 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Car05g01269 204 Gene3D - 22 203 IPR029000 -
Car05g01269 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Car05g01269 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01269 Car-Chr5 56120239 56123425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01269 49 199 U-box Gene Family AT5G67530 43.137 2.88e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01269 K01802 - gmx:100305485 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01269 05 56120239 56123425 Car05g01269 05 56120239 56123425 ECH