Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01257 ATGCCTTCAATTGGTGCTAAACGTAGATTCAGATCTCCTGCACCACCACTCTCCGCCGCATCTCCGCCAACTCGGAAATCCCTCCGCCGTTGCATCACTGCAACTCCCAATTCCGTCCCTACCGTGATTCAGAAAATCGACACCGACGAAAATAAAGTAGAATCGCATGAATCCAATGCCGTGAAATCCAGATGGAATCCCAAAGATGTTGAGCAATTGAGAATGGCGAAAGAAGTGTTGCACATGTCTACTGCACCGTCTACCATAGTGTGTCGTGAGGAGGAGCAAAATGTGGTGTTGGAGTTTTGCAAAGGGTGCGTTGAACATGAAAAGGCTGGGAGTCTCTATATATGTGGGTGTCCTGGAACTGGTAAATCTCTCTCTATGGAGAAAGTGAAAGATAATTTACTCAACTGGGCTACACAGGGAGATTTTCCTCTGCCTGATGTTTTATCTGTAAATTGTACATCTCTGTCAAATACATCTGATATTTTCTCAAAGATACTTGGGTTACACAAATCCCTAGGCAAAAAGGGTTCAGGCACACCCTTACAGCAACTTCAGAACATGTATTCTCATGAATCACCTACAACAAACATGATATTACTAGTAGCAGATGAATTAGATTATCTAATAACCAAAGACAGAGCTGTGCTCCATGATCTTTTCATGCTTACCACTTTCCCATTTTCCAGATGTATACTAATAGGTGTAGCAAATGCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTGACATCATTAAATTGCAAGCCTACTGTTGTAAATTTTCGAGCATACACCAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAAATGAACTCCCTTACATTGTTTTCCAACATCAAGCATTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGGGATATGCGAAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGAATCTGCTTGCAGTTTGAATGCTTTGGAAGAGAAATCATCCTCAGAACAAAATCTTCCTACAGCTCCTGATTTTGTAAAAAAACAAGAATTTGATATGGTAAGGATTGATCATATGGCTCTTGCCTTGTCAAAAACATATAGATCACCCGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCGATGAAACATTTCCGTGGGGCCAAGAAAGATACAACCCTTGGCGAGTTATATAAATCTTACACGACAATATGCAAATCATCACTAATTCCCCCAACAGGAATCATGGAATTTTCAAACATGTGCCGAGTGCTAAATGACCAGGGCCTAATTAAACTAGGACAATCTCGAGATGATAAATTGAGAAGAGTGACACCCAAAATAGATGAAGGCGATATTACTTTTGCATTGCAGGGAATCCGTTTTTTTCGAAATTGTCTTCAATGA 1449 0.4072 MPSIGAKRRFRSPAPPLSAASPPTRKSLRRCITATPNSVPTVIQKIDTDENKVESHESNAVKSRWNPKDVEQLRMAKEVLHMSTAPSTIVCREEEQNVVLEFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKDNLLNWATQGDFPLPDVLSVNCTSLSNTSDIFSKILGLHKSLGKKGSGTPLQQLQNMYSHESPTTNMILLVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPTVVNFRAYTKDQILRILEERLNELPYIVFQHQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESACSLNALEEKSSSEQNLPTAPDFVKKQEFDMVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDTTLGELYKSYTTICKSSLIPPTGIMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTPKIDEGDITFALQGIRFFRNCLQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01257 482 PIRSF Cdc6 12 482 IPR016314 GO:0006270|GO:0051301
Car05g01257 482 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 25 481 - -
Car05g01257 482 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 25 481 - -
Car05g01257 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 327 IPR027417 -
Car05g01257 482 Coils Coil 318 338 - -
Car05g01257 482 CDD Cdc6_C 385 467 IPR015163 -
Car05g01257 482 Pfam CDC6, C terminal winged helix domain 392 470 IPR015163 -
Car05g01257 482 Gene3D - 377 470 IPR036388 -
Car05g01257 482 Gene3D - 69 262 IPR027417 -
Car05g01257 482 CDD AAA 95 253 - -
Car05g01257 482 SUPERFAMILY "Winged helix" DNA-binding domain 377 480 IPR036390 -
Car05g01257 482 Pfam AAA lid domain 289 323 IPR041083 -
Car05g01257 482 MobiDBLite consensus disorder prediction 1 27 - -
Car05g01257 482 Gene3D - 263 348 - -
Car05g01257 482 SMART Cdc6_C_2 392 471 IPR015163 -
Car05g01257 482 Pfam AAA domain 110 227 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01257 Car-Chr5 55972456 55977292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01257 15 481 Core DNA Replication Machinery Family AT2G29680 60.211 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01257 K02213 - gmx:100791200 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01257 05 55972456 55977292 Car05g01257 05 55972456 55977292 ECH