Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01253 ATGAAAACATTTGGTGTACGTGTTGGTGGTGGTGATATGAAGATCACTCACCACTCTTCGATAGGTCCTCCTTTAACAGCCATTGATAGATTTTTATGGAGTCAACACAACCACTTCCCTCAAAAGAAACATCAACAAAATGTTGATGATGGAAATTTTTGTAGTTCTAATTGTTCTAATGCTTCAACATATTGTTTCATGTGGCCTAATAATGTCATGACTCAAGAAGCAAACTTTGTTGATCATCTAATGGCAAATGAAGATATGATGAATTGGTCAAACCAAATTCCTTCATTGTGTGTGGAGAAAGAAGATATCATCAATGGTTTAGGGAAGGGTGGAAAAGGTGTTGGAAGAAGACCTAAGAAAGTGTCTAATTTGTCTTTGATCAAAGGACAATGGACCGATGAAGAAGACAGAAAATTGTTGAAGTTGGTGAAGCAACATGGTGTAAGAAAATGGTCACAAATAGCTGAGAAATTGGAAGGAAGAGCTGGAAAGCAGTGTAGAGAGAGATGGCATAATCATCTGAGGCCTGATATTAAAAAAGATAGTTGGAGTGAAGAAGAAGAGAGAATATTAGTAGAAAGTCATGGCAAGATTGGAAACCGTTGGGCAGAGATAGCAAAGAAAATTCCAGGAAGAACAGAGAATGCAATAAAGAACCATTGGAATGCAACAAAAAGAAGACAAAATTCAAGAAGAAAGAACAAAAGGCCTCAAACCACAAATGGAAAACCACAATCTTCAATACTTCAAGATTATATCAAAACTTTATCAACTCAAACTAATAACACAACCAAGAGTAACTTCATCACACCAACCAATACTACTCCATCTAGCTCCACTTCAGCTATCTCTGATGAACCTTCTCAAAATTACCAATCTAACCTTGTTTTTGAAAACTCATCATCTCCACTTATAGCTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTTAAAACTAATAATAGTAATCAGATTCTCACTGATCATGTCAATGAAAATGGTTTTGTTCATTCCAATTACCCTAATAAGACAAACTCACataataatagtaataataataaCATGTACTTGAGTACTTCAACTTCTTCCAACCCTATGATGATGAATTACCTTAATTCTGATCACTACGTGTCTCCAATGATGAATAATGTGGAGTTGCAGCTTGGGAGTATGAATTGTTCTTCAAATGGAAAGAGAGAGATGGATTTGTTAGACTTGGTTTCTTCTACTCACTTTTTCTACTAG 1263 0.3515 MKTFGVRVGGGDMKITHHSSIGPPLTAIDRFLWSQHNHFPQKKHQQNVDDGNFCSSNCSNASTYCFMWPNNVMTQEANFVDHLMANEDMMNWSNQIPSLCVEKEDIINGLGKGGKGVGRRPKKVSNLSLIKGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHGKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTNGKPQSSILQDYIKTLSTQTNNTTKSNFITPTNTTPSSSTSAISDEPSQNYQSNLVFENSSSPLIAESYDDELLFMQQLFKTNNSNQILTDHVNENGFVHSNYPNKTNSHNNSNNNNMYLSTSTSSNPMMMNYLNSDHYVSPMMNNVELQLGSMNCSSNGKREMDLLDLVSSTHFFY 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01253 420 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Car05g01253 420 ProSiteProfiles Myb-like domain profile. 126 177 IPR001005 -
Car05g01253 420 Pfam Myb-like DNA-binding domain 134 191 - -
Car05g01253 420 PANTHER MYB PROTEIN-RELATED 49 400 - -
Car05g01253 420 Gene3D - 130 182 - -
Car05g01253 420 CDD SANT 134 177 IPR001005 -
Car05g01253 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 232 IPR017930 -
Car05g01253 420 MobiDBLite consensus disorder prediction 265 290 - -
Car05g01253 420 SMART sant 182 230 IPR001005 -
Car05g01253 420 SMART sant 130 179 IPR001005 -
Car05g01253 420 MobiDBLite consensus disorder prediction 227 241 - -
Car05g01253 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 181 IPR017930 -
Car05g01253 420 SUPERFAMILY Homeodomain-like 128 224 IPR009057 -
Car05g01253 420 MobiDBLite consensus disorder prediction 214 251 - -
Car05g01253 420 Gene3D - 184 257 - -
Car05g01253 420 CDD SANT 185 228 IPR001005 -
Car05g01253 420 PANTHER MYB TRANSCRIPTION FACTOR 49 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01253 Car-Chr5 55858853 55861275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01253 22 416 MYB Transcription Factor Family AT5G11050 38.303 1.89e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01253 Myb_DNA-bind_6 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01253 K09422 - gmx:100786295 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01253 05 55858853 55861275 Car05g01253 05 55858853 55861275 ECH