Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01251 ATGAAGATCACTCACCACTCTTCAATAGGTCCTCCTTTAACAGCCATTGATAGATTTTTATGGAGTCAACACAACCACTTCCCTCAAAAGAAACATCAACAAAATGTTGATGATGGAAATTTTTGTAGTTCTGGTTGTTCTAATGCTTCAACATATTGTTTCATGTGGCCTAATAATGTCATGACTCAAGAAGCAAACTTTGTTGATCATCTAATGGCAAATGAAGATATGATGAATTGGACAAACCAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGTCAATGGTTTAGGGAAGGGTGGAAAAGGTGTTGGAAGAAGAAATAAGAAAGTGTTTACTTTGTCTTTGATCAAAGGACAATGGAGCGACGAAGAAGACAGAAAATTGTTGAAGTTGGTGAAGCAACATGGTGTAAGAAAATGGTCACAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGAGAGAGATGGCATAATCATCTGAGGCCTGATATTAAAAAAGATAGTTGGAGTGAAGAAGAAGAGAGAATATTAGTAGAAAGTCATGGCAAGATTGGAAACCGTTGGGCAGAGATAGCAAAGAAAATTCCAGGAAGAACAGAGAATGCAATAAAGAACCATTGGAATGCAACAAAAAGAAGACAAAATTCAAGAAGAAAGAACAAAAGGCCTCAAACCACAAATGGTAAACCACAATCTTCAATACTTCAAGATTATATCAAAACTTTATCAACTCAAACAAATAACACAACCAAGAGTAACTTCATCACACCAACCAATACTACTCCATCTAGCTCCACTTCAGCTATCTCTGATGAACCTTCTCAAAATTACCAATCTAACCTTGTTTTTGAAAACTCATCATCTCCACTTATAGCTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTTAAAACTAATAATAGTAATCAGATTCTCACTGATCATGTCAATGAAAATGGTTTTGTTCATTCCAATTACCCTAATAAGACAAACTCACataataatagtaataataataaCATGTACTTGAGTACTTCAACTTCTTCCAACCCTATGATGATGAATTACCTTAATTCTGATCACTATCTTTCTCCAATGATGAATAATGTTGAGTTGCAGCTTGGGAGTAAGAATTGTTCTTCAAATGGAAAGAGAGAGATGGATTTGCTAGACTTGGTTTCTTCTACTCACTTTTTCTACTAG 1224 0.3497 MKITHHSSIGPPLTAIDRFLWSQHNHFPQKKHQQNVDDGNFCSSGCSNASTYCFMWPNNVMTQEANFVDHLMANEDMMNWTNQIPSLCVEKEDVNGLGKGGKGVGRRNKKVFTLSLIKGQWSDEEDRKLLKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHGKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTNGKPQSSILQDYIKTLSTQTNNTTKSNFITPTNTTPSSSTSAISDEPSQNYQSNLVFENSSSPLIAESYDDELLFMQQLFKTNNSNQILTDHVNENGFVHSNYPNKTNSHNNSNNNNMYLSTSTSSNPMMMNYLNSDHYLSPMMNNVELQLGSKNCSSNGKREMDLLDLVSSTHFFY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01251 407 CDD SANT 121 164 IPR001005 -
Car05g01251 407 MobiDBLite consensus disorder prediction 214 228 - -
Car05g01251 407 PANTHER MYB TRANSCRIPTION FACTOR 37 388 - -
Car05g01251 407 MobiDBLite consensus disorder prediction 252 277 - -
Car05g01251 407 ProSiteProfiles Myb-like domain profile. 118 164 IPR001005 -
Car05g01251 407 ProSiteProfiles Myb-like domain profile. 165 215 IPR001005 -
Car05g01251 407 SMART sant 117 166 IPR001005 -
Car05g01251 407 SMART sant 169 217 IPR001005 -
Car05g01251 407 MobiDBLite consensus disorder prediction 201 238 - -
Car05g01251 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 168 IPR017930 -
Car05g01251 407 PANTHER MYB PROTEIN-RELATED 37 388 - -
Car05g01251 407 CDD SANT 172 215 IPR001005 -
Car05g01251 407 Pfam Myb-like DNA-binding domain 121 178 - -
Car05g01251 407 SUPERFAMILY Homeodomain-like 115 211 IPR009057 -
Car05g01251 407 Gene3D - 171 242 - -
Car05g01251 407 Gene3D - 117 169 - -
Car05g01251 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 219 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01251 Car-Chr5 55850244 55852921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01251 10 403 MYB Transcription Factor Family AT5G11050 38.194 9.57e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01251 Myb_DNA-bind_6 7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01251 K09422 - gmx:100786295 357.836