Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01248 ATGGCATCCATTGCTACTTTCTTCAACAAGTTTCACTATCTTTTCATCCTCATTGTCCACCTTGGCTGCTTCTTCACAACCACCGCTACCTCCGCCGCCGGAAAACAAGACAGCCATCATTTGTTATCATCAAAGAAACGAAAAATCTCACCTTTATCTCAACCCTCTTCACCTTCGCACCCTAAATTCAAAACCAACAAAGCCCTTTCTTCTTCTTGGCATTTCATCAAACACCTTTTCTCCACCAAGTCCTGCAAAACAGCCACAGCCACAAGCACCACCAATTCATCACCTCAATCCACCTCCACCGTAACTGCTGCCGCCACGTTAACCACCGCAAGATCCTCCCAACAATCTCTCATTTCATCGGTTCAACCCGACTCAAATTTCCAAGATTCTCCACGCAAGAAACAACCCGAATCCGACATCTCCGCCGACAACAATCTCTTCTTCCCCCTCCGCAATGACATCTTCCCTTGCACCGCGTGCGGTGAGATTTTCCAGAAACCAAACCTCCTCGAACAGCACCAATCAACAAACCATGCCGTATCGGAACTCACCGGATCCGACCCGGGTCACAACATCGTTCAAATCATATTTAAATCGGGTTGGCCCGAAACCCGAGAGTTTCCAACTATTCACCGAATCCTAAAGATCCACAACAGCCAGAAGATCCTCTCAAAGTTCGAGGAGTATCGCGAAACAGTGAAATCCAAAGCAGCGCGTCACACGCGCCGCCGCGACGAACGGTGCATCGCCGACGGCAACGAACTAATGCGTTTTCACTGCTCCACTTTTTTATGCGAGTTAGGACTTAACGGGGATTCTTCAATTTGTTCTCAGCAATTTTGTAATATTTGCGGAGTTATTAAATCAGGATTTTCACCGAAATTAGATGGAATTTCCACGCTGTCAACAAGCTGGAGGGGACACGTGTCAATTCCTGATGAGATCGAGCGTGAATTTCGGTTCATGAACGTGAAACGGGCTATGCTTGTTTGTCGAGTTATTGCGGGTCGGGTTGGATCCGATTCGGATGATGGCGAGTTGGATAAATCGGATGGGGGTTTTGATTCGGTGATGGCGCGGGGAGAGAATGGTGTTTACACCCGACTTGATGAAGAAGAGTTATTGGTTTTTAATCCAAGGGCTGTGCTTCCTTGCTTTGTTATTGTGTATAGTGTATGA 1188 0.4722 MASIATFFNKFHYLFILIVHLGCFFTTTATSAAGKQDSHHLLSSKKRKISPLSQPSSPSHPKFKTNKALSSSWHFIKHLFSTKSCKTATATSTTNSSPQSTSTVTAAATLTTARSSQQSLISSVQPDSNFQDSPRKKQPESDISADNNLFFPLRNDIFPCTACGEIFQKPNLLEQHQSTNHAVSELTGSDPGHNIVQIIFKSGWPETREFPTIHRILKIHNSQKILSKFEEYRETVKSKAARHTRRRDERCIADGNELMRFHCSTFLCELGLNGDSSICSQQFCNICGVIKSGFSPKLDGISTLSTSWRGHVSIPDEIEREFRFMNVKRAMLVCRVIAGRVGSDSDDGELDKSDGGFDSVMARGENGVYTRLDEEELLVFNPRAVLPCFVIVYSV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01248 395 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 394 - -
Car05g01248 395 MobiDBLite consensus disorder prediction 116 144 - -
Car05g01248 395 MobiDBLite consensus disorder prediction 47 65 - -
Car05g01248 395 ProSitePatterns Zinc finger C2H2 type domain signature. 160 181 IPR013087 -
Car05g01248 395 MobiDBLite consensus disorder prediction 116 132 - -
Car05g01248 395 Gene3D - 183 394 - -
Car05g01248 395 MobiDBLite consensus disorder prediction 36 65 - -
Car05g01248 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 186 IPR013087 -
Car05g01248 395 PANTHER NUCLEIC ACID BINDING PROTEIN 3 394 - -
Car05g01248 395 SUPERFAMILY ADP-ribosylation 184 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01248 Car-Chr5 55810635 55812608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01248 73 395 C2H2 Transcription Factor Family AT2G29660 55.060 8.28e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g01248 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01248 - - gmx:100785244 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01248 05 55810635 55812608 Car05g01248 05 55810635 55812608 ECH